Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108913g00001 GCTCCGGTAATCGATGTTTCTCAGTTTGGTTACTTTAAGGTTCTTGGTAAAGGTGTTTTGCCAGAGAATCAGCCTGTTGTTGTTAAAGCTAAGCTGATTTCGAAGATTGCTGAGAAGAAGATTAAAGAGGCTGGTGGTGCTGTTCTTCTTACTGCTTAA 159 0.4088 APVIDVSQFGYFKVLGKGVLPENQPVVVKAKLISKIAEKKIKEAGGAVLLTA 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108913g00001 52 Gene3D - 1 52 - -
Trme108913g00001 52 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 52 - -
Trme108913g00001 52 ProSitePatterns Ribosomal protein L15 signature. 13 45 IPR001196 GO:0003735|GO:0005840|GO:0006412
Trme108913g00001 52 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 4 48 IPR021131 -
Trme108913g00001 52 SUPERFAMILY Ribosomal proteins L15p and L18e 2 51 IPR036227 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108913g00001 2 52 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 82.353 5.42e-24 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108913g00001 K02900 - cpap:110817091 81.2629