Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108864g00001 ATGGAACTTTCCAGCACCCAAGATGGGGATATCCCAATCCCAATAATAAACAACACTAATAATTATGGTGGTGGTGGTGGTGCTACTTCTAATGGACATGCTCATCACATGCTTCATCACCATCATCATGTTCATGACCACCCTACTCCTCTACACCACAACCATAATCACGGTAATATTATATCATCTTCCTCAACTGCAGCAGCAGTACCAGTGGNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNACCACCACCACCACCTCTATGCAAGCTGTCAGTGGTGTGGAATTAGATCATGATCACTCCTCCTACAAGAAATCATCATCAGTTGTGAGGTACAGAGAATGTCTTAAGAACCATGCAGCTGCAATGGGAGGGAATGCCACGGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAACAAGGTACCATTGAGGCACTCAACTGCTCTGCCTGTCATTGCCACAGAAACTTCCACAGAAAAGAGGTTGAAGGTGACACTGAGGAAGACAGCTACCACCACCACCA 539 0.4286 MELSSTQDGDIPIPIINNTNNYGGGGGATSNGHAHHMLHHHHHVHDHPTPLHHNHNHGNIISSSSTAAAVPVXXXXXXXXXXXXXXTTTTTSMQAVSGVELDHDHSSYKKSSSVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVEGDTEEDSYHHH 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108864g00001 179 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 117 166 IPR006456 -
Trme108864g00001 179 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 96 170 - -
Trme108864g00001 179 MobiDBLite consensus disorder prediction 1 36 - -
Trme108864g00001 179 Pfam ZF-HD protein dimerisation region 115 167 IPR006456 -
Trme108864g00001 179 MobiDBLite consensus disorder prediction 1 27 - -
Trme108864g00001 179 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 116 167 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108864g00001 Trme-Chr108864 1 539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108864g00001 1 179 ZF-HD Transcription Factor Family AT1G14440 41.237 4.25e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trme108864g00001 ZF-HD_dimer 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108864g00001 - - tpra:123910799 190.66