Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10875g00001 ATGAAGGATGTATTCAAGGAAGAGGCTGCTATTCCTGACGGTGATGATGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGACGACGACTATAATCCAGAGAGGAAAGAAGACAGCCACGACGGCATCAACACAGAAGGAAATGATGAAAATGCATCTGCTGATTCAAGTAGTTCTGGCAGTATGTGGTCTTTAAATGGAGAATGTTCTCTTTTAGATGAAGGCATCAACCTTGAATATTATTCTGTTAACGGCCACGTAGATTCCGATGAATCCGGGGAAATAGCATGTGGCCGTAGGCAGCGAAGAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCTTCCATATGAACAAGTGAGTGAAGACGAAGATTGGGGTCCTGGAAAAAGACGGCGAAGAGAAAAGGAATCTGATGCGGTTAATACTCTTATGACTCTGCATGAAAGTGAAAATAAACATCCGAATAAAGAGAAGAAAGATAGAATAAGAGGGGATTCTTCAGGCATAAAAAGACCTTGTTTCAGGCTTCCACATGATGCAGTTGAGAAGCTTCGCCAGGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCTGTGAAGGATGCCCTTTCGAAAGAATTGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAACGAGAAAG 717 0.417 MKDVFKEEAAIPDGDDALLNQEEEWPSDDPEDDDYNPERKEDSHDGINTEGNDENASADSSSSGSMWSLNGECSLLDEGINLEYYSVNGHVDSDESGEIACGRRQRRAVDYKKLYDEMFGKDALPYEQVSEDEDWGPGKRRRREKESDAVNTLMTLHESENKHPNKEKKDRIRGDSSGIKRPCFRLPHDAVEKLRQVFAENELPPKSVKDALSKELGLDAAKVNKWFKNARYMALKTRK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10875g00001 239 SUPERFAMILY Homeodomain-like 174 234 IPR009057 -
Trme10875g00001 239 FunFam pathogenesis-related homeodomain protein 179 239 - -
Trme10875g00001 239 MobiDBLite consensus disorder prediction 17 36 - -
Trme10875g00001 239 Gene3D - 179 239 - -
Trme10875g00001 239 MobiDBLite consensus disorder prediction 129 151 - -
Trme10875g00001 239 MobiDBLite consensus disorder prediction 129 183 - -
Trme10875g00001 239 CDD homeodomain 180 232 IPR001356 GO:0003677
Trme10875g00001 239 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1 238 - -
Trme10875g00001 239 MobiDBLite consensus disorder prediction 1 70 - -
Trme10875g00001 239 ProSiteProfiles 'Homeobox' domain profile. 177 237 IPR001356 GO:0003677
Trme10875g00001 239 MobiDBLite consensus disorder prediction 159 178 - -
Trme10875g00001 239 SMART HOX_1 179 239 IPR001356 GO:0003677
Trme10875g00001 239 Pfam Homeodomain 188 232 IPR001356 GO:0003677
Trme10875g00001 239 MobiDBLite consensus disorder prediction 50 70 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10875g00001 2 239 Homeobox Transcription Factor Family AT4G29940 49.801 1.34e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trme10875g00001 Homeodomain 3.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10875g00001 - - vum:124821518 368.237