Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108590g00001 ATGGGAAGAGGGAGAGTTGAATTAAAGAGAATAGAGAACAAAATTAACAGACAAGTTACTTTTGCAAAGAGAAGAAATGGTGTACTCAAGAAGGCTTATGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATCGTGGAAAGCTCTATGAATTCAGCAGCACCTCTAGATCTATGGTTTAG 198 0.3788 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSRSMV 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108590g00001 65 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Trme108590g00001 65 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trme108590g00001 65 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Trme108590g00001 65 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trme108590g00001 65 FunFam MADS-box transcription factor MADS-MC 13 65 - -
Trme108590g00001 65 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trme108590g00001 65 CDD MADS_MEF2_like 2 61 IPR033896 GO:0000977|GO:0045944
Trme108590g00001 65 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 63 - -
Trme108590g00001 65 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Trme108590g00001 65 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trme108590g00001 65 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme108590g00001 65 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108590g00001 Trme-Chr108590 202 658 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108590g00001 1 61 MADS-box Gene Family AT3G02310 93.443 1.90e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme108590g00001 SRF-TF 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108590g00001 K09264 - gmx:100797819 120.553