Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10855g00001 ATGGCTTCCACCACCAAAGACTCAGATTTTGCATATTTGGAACACATTCAACAATACCTTCTTTTTGATGATTCGAGCCTTATTACATCAACTCATGATCAATCTTTACCAAGCCCTAAAAGTGACAATGATTCCGACACAATTGTAGAGGCGCGTGAAATAAGTGCACCTCCTACATGGAAGCGATACAAGGGTGTGAGGCGTAGGCCATGGGGTAAGTTCGCGGCAGAGATCCGAGATCCCAAGAAGAATGGTGCTAGAGTTTGGCTTGGAACTTATCTGACCGAGGAGGAAGCAGGTTTGGCTTACGACAAAGCTGCCTTCAAGATGCGTGGCCGAAAAGCTAAGCTTAATTTTCCCCACCTCATTGAGTCTGATGTGTTAACATCAGAGCCAAAGAGGGAGGTGGTTTTGAAACGGGAGTCACCGGAGCCCTCTTCATCGGAGGGAAGTTTTTCCTAA 462 0.4632 MASTTKDSDFAYLEHIQQYLLFDDSSLITSTHDQSLPSPKSDNDSDTIVEAREISAPPTWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGLAYDKAAFKMRGRKAKLNFPHLIESDVLTSEPKREVVLKRESPEPSSSEGSFS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10855g00001 153 CDD AP2 61 122 IPR001471 GO:0003700|GO:0006355
Trme10855g00001 153 FunFam Ethylene-responsive transcription factor 2 61 121 - -
Trme10855g00001 153 Gene3D AP2/ERF domain 61 121 IPR036955 GO:0003700|GO:0006355
Trme10855g00001 153 MobiDBLite consensus disorder prediction 31 51 - -
Trme10855g00001 153 PANTHER DNA-BINDING DOMAIN 46 137 IPR044808 GO:0003700|GO:0009873
Trme10855g00001 153 SMART rav1_2 62 126 IPR001471 GO:0003700|GO:0006355
Trme10855g00001 153 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Trme10855g00001 153 ProSiteProfiles AP2/ERF domain profile. 62 120 IPR001471 GO:0003700|GO:0006355
Trme10855g00001 153 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Trme10855g00001 153 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Trme10855g00001 153 MobiDBLite consensus disorder prediction 133 153 - -
Trme10855g00001 153 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10855g00001 Trme-Chr10855 746 1427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10855g00001 62 149 AP2-EREBP Transcription Factor Family AT2G44840 70.455 1.48e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme10855g00001 AP2 9.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10855g00001 K09286 - gmx:102663872 183.726