Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108549g00001 TCTCTTCATAATCCAAATGTTGCTCCTCTTGTTGGTTTTTGTATCGACTCTGAGGAAGGTTGGTTTTTGGTGTACAAGTATGTCTCGGGTGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAAAGGTGGTAAGGGTAATTCAACACTTCCATGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCGGAAGCTATAGCTTATCTGCATAGTGGAACTGAAAGATGCGTTGTTCATAGAGACATTAAACCGTCTAACATTCTGCTTTCTTCTAAGAAGACTCCAAAG 288 0.4306 SLHNPNVAPLVGFCIDSEEGWFLVYKYVSGGSLERHLHGRKKGGKGNSTLPWSVRYKVAIGIAEAIAYLHSGTERCVVHRDIKPSNILLSSKKTPK 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108549g00001 96 Gene3D Transferase(Phosphotransferase) domain 1 1 96 - -
Trme108549g00001 96 PANTHER OS01G0253100 PROTEIN 1 96 - -
Trme108549g00001 96 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Trme108549g00001 96 Pfam Protein kinase domain 2 94 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme108549g00001 96 SUPERFAMILY Protein kinase-like (PK-like) 2 96 IPR011009 -
Trme108549g00001 96 ProSiteProfiles Protein kinase domain profile. 1 96 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108549g00001 Trme-Chr108549 271 660 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108549g00001 1 96 Receptor kinase-like Gene Family AT5G10530 41.667 7.76e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme108549g00001 Pkinase 2.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108549g00001 - - psat:127083811 182.57