Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108449g00001 TACACTATTCCTAAGGGATGGAAGGTGATTGCATCATTTCGTGCTGTGCATTTGAATGCTGAACATTTCAAAGAAGCCCGCACCTTCAATCCATGGAGATGGCAGAATAATAATAACTCAGAAGCTGTGGCAAGCCCTGTGAATGTCTTTACACCATTTGGAGGAGGACCGAGGCTGTGCCCTGGCTATGAGCTAGCCAGAGTTGTACTTTCGGTCTTCCTTCATCGCATGGTCACTCGCTTCAGGTACAAACATTTTGCTTGTTAA 267 0.4569 YTIPKGWKVIASFRAVHLNAEHFKEARTFNPWRWQNNNNSEAVASPVNVFTPFGGGPRLCPGYELARVVLSVFLHRMVTRFRYKHFAC 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108449g00001 88 Gene3D Cytochrome P450 1 86 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme108449g00001 88 PRINTS E-class P450 group I signature 50 60 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme108449g00001 88 PRINTS E-class P450 group I signature 12 36 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme108449g00001 88 PRINTS E-class P450 group I signature 60 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme108449g00001 88 SUPERFAMILY Cytochrome P450 1 84 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme108449g00001 88 PANTHER CYTOCHROME P450 26 1 81 - -
Trme108449g00001 88 Pfam Cytochrome P450 1 84 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme108449g00001 88 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 53 62 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108449g00001 Trme-Chr108449 205 572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108449g00001 1 83 Cytochrome P450 AT5G05690 73.494 2.47e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108449g00001 K09588 - vvi:100258692 148.288