Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108436g00001 GGATATTACCGATGTAGCAGTTCAAAAGGATGCCCCGCTAGAAAACAAGTTGAACGAAGCCGTGTGGACCCCACAAACCTCCTCGTAACCTACGCCTACGATCACAACCACTCCCTCCCTCTCCCCAAATCTCACTCATCTTCCTCCGCCGTAACCGCCACCGCAACAACCACCGTCGACTCTCCTGGAGATGACTCTTCCGGTGAATGCACCGCCGCTACTCCTCCTCAGCCAGAGAATCCAGCCGTTTTCGCCTCTCATCCTGACTTCGACTTCGCCGGCGAACACCACGCCGTGTTTGGATGGTTCGACGACATGGCTTCCACCGGAGTTCTTGTAAGTCCGATCTGCGGCGGAGTAGAGGATGTGACGCTGACGATCAGGGAAGAAGATGAATC 398 0.5553 GYYRCSSSKGCPARKQVERSRVDPTNLLVTYAYDHNHSLPLPKSHSSSSAVTATATTTVDSPGDDSSGECTAATPPQPENPAVFASHPDFDFAGEHHAVFGWFDDMASTGVLVSPICGGVEDVTLTIREEDES 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108436g00001 133 Gene3D WRKY domain 1 41 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trme108436g00001 133 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 78 IPR044810 GO:0003700
Trme108436g00001 133 MobiDBLite consensus disorder prediction 40 74 - -
Trme108436g00001 133 SMART WRKY_cls 1 39 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme108436g00001 133 MobiDBLite consensus disorder prediction 1 20 - -
Trme108436g00001 133 ProSiteProfiles WRKY domain profile. 1 40 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme108436g00001 133 MobiDBLite consensus disorder prediction 39 85 - -
Trme108436g00001 133 Pfam WRKY DNA -binding domain 2 37 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trme108436g00001 133 SUPERFAMILY WRKY DNA-binding domain 2 40 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108436g00001 Trme-Chr108436 1 398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108436g00001 1 105 WRKY Transcription Factor Family AT3G58710 49.123 1.27e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trme108436g00001 WRKY 4.8e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108436g00001 - - cam:101504205 175.252