Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108320g00001 GTTCGTGATGTAAGAGATGGAATTGGAAGTTTATCAATGAGGAGTTTTGAGCTAAGGCTTCCTGGCCATGACAGGGGCAAGTCGAGTAATTTGGTCCATGAGTCAAACGAGCAGCCACGTGTAATTGAGAATAGCCGGTGGGCTAGTCTTCCGCCGGAGCTTCTTTGCGATGTAATTAAGAGATTGGAAGAAAGTGAGAGTACATGGCCTGCTCGAAAGCATGTTGTTGCGTGTGCTGCTGTTTGCAAATCTTGGAGAGAAATGTGCAAAGAAATTGCTAGCAGTGTTGAGTCAAGTGGGAAGATTACTTTCCCGGTTTCCCTAAAGCAGTTAGAAGTGATATCAAGGTAA 351 0.4501 VRDVRDGIGSLSMRSFELRLPGHDRGKSSNLVHESNEQPRVIENSRWASLPPELLCDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIASSVESSGKITFPVSLKQLEVISR 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108320g00001 116 CDD F-box_AtTLP-like 47 91 - -
Trme108320g00001 116 FunFam Tubby-like F-box protein 42 95 - -
Trme108320g00001 116 Pfam F-box domain 47 92 IPR001810 GO:0005515
Trme108320g00001 116 SUPERFAMILY F-box domain 35 90 IPR036047 GO:0005515
Trme108320g00001 116 PANTHER TUBBY-RELATED 35 109 - -
Trme108320g00001 116 Gene3D - 41 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108320g00001 Trme-Chr108320 2 451 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108320g00001 1 110 TUB Transcription Factor Family AT1G76900 66.667 1.05e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108320g00001 K19600 - qsu:111992792 184.882