Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108292g00001 ATGTTGGGCGAACAACTTTATCCCCTTGTGGACCCTCTTACAACAAACGAACTTACAACAAAGGTGACAGAGATGTTGCTTGAAATGGACCTAGCAGAAGTAATTAATCTCATTGAATGTCCTGATGACCTTAAAATAAAGGTTTCTGAGGCATTGCAGGTCCTTCATGACGCTGCATCGGAATCTAAAGCTGGTGATCAACTTGGTTCGTTGTCATTGAACGAATGA 228 0.4167 MLGEQLYPLVDPLTTNELTTKVTEMLLEMDLAEVINLIECPDDLKIKVSEALQVLHDAASESKAGDQLGSLSLNE 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108292g00001 75 Pfam Poly-adenylate binding protein, unique domain 1 55 IPR002004 GO:0003723
Trme108292g00001 75 SMART poly_2 1 58 IPR002004 GO:0003723
Trme108292g00001 75 Gene3D - 1 70 - -
Trme108292g00001 75 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 60 IPR002004 GO:0003723
Trme108292g00001 75 SUPERFAMILY PABC (PABP) domain 1 67 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108292g00001 Trme-Chr108292 302 529 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108292g00001 1 75 Eukaryotic Initiation Factors Gene Family AT1G49760 54.545 2.63e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108292g00001 K13126 - gmx:100783163 99.7525