Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108281g00001 AGAGACTCGAGACTAAGGATCATACATAGAGATTTGAAAGCAAGCAACATCTTACTTGATGGTGACATGATTCCAAAAATATCAGACTTTGGTTTAGCTAGAATTGTTAAAGGTGGAGAAGATGATGAAGCTAACACAAACAGAGTTGTTGGAACATATGGTTATATGCCGCCTGAATATGCAATGGAGGGACTTTTCTCTGAGAAATCAGATGTCTACAGCTTTGGGGTTTTATTGCTAGAGATTGTTAGCGGAAGAAGAAATAGTAGCTTTTATAACCACGAGGATTCTCTTAGTCTCGTAGGCTTTGTAAGTCTATATATTTCATGCCCTTAA 336 0.375 RDSRLRIIHRDLKASNILLDGDMIPKISDFGLARIVKGGEDDEANTNRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNSSFYNHEDSLSLVGFVSLYISCP 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108281g00001 111 Gene3D Transferase(Phosphotransferase) domain 1 1 108 - -
Trme108281g00001 111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 7 19 IPR008271 GO:0004672|GO:0006468
Trme108281g00001 111 FunFam Os07g0541700 protein 1 52 - -
Trme108281g00001 111 SUPERFAMILY Protein kinase-like (PK-like) 5 104 IPR011009 -
Trme108281g00001 111 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 98 - -
Trme108281g00001 111 Pfam Protein tyrosine and serine/threonine kinase 6 88 IPR001245 GO:0004672|GO:0006468
Trme108281g00001 111 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108281g00001 Trme-Chr108281 1 426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108281g00001 1 99 Receptor kinase-like Gene Family AT4G11530 71.717 8.14e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme108281g00001 PK_Tyr_Ser-Thr 1.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108281g00001 - - gmx:100786846 187.578