Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10826g00001 AGAGATCATTCAGGACAATGGAGCAATTATTACCACAGTGGACAACATCCTCATCCAAATTGGCAAGGAGGACCAGGACCAGGGGGCCCAGGCCCAAGCCCACATGGAATGGATCATGTTGTTAGAGTCCAACAAGCACCAAATGGAAGTGGTGTTTGGGGTGCACCACACCCTTTAATGAATAGTGGTGACATGAGTGCCAATTATTCATATGGAATGGGCCCACCCATGCCTCCTCCTTCACCAGGCCTATCTCTTACTCTCAAGGGTGGTACCTTCACTTATGAGGAATTGGCATCAGCTACNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGTTAAAAGTTTAAAATCGGGTAGTGGGCAAGGCGAACGTGAGTTTCAGGCAGAGATTGATATCATTAGTCGTGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGTGTTTCCGGTGGACAAAGAATGTTGGTTTATGAATTTGTTCCAAATAAAACTTTGGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCATTAGGATCAGCTAAAGGGCTTGCTTACCTTCATGAAGATTGTAGTCCTCGTATTATCCATCGTGATATTAAGGCTGCTAATGTTCTAATTGATGATAGCTTTGAAGCTAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACTGATACTAATACACATGTTTCAACCCGTGTCATGGGGACATTCGGGTAA 813 0.3924 RDHSGQWSNYYHSGQHPHPNWQGGPGPGGPGPSPHGMDHVVRVQQAPNGSGVWGAPHPLMNSGDMSANYSYGMGPPMPPPSPGLSLTLKGGTFTYEELASATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10826g00001 270 FunFam Protein kinase superfamily protein 181 253 - -
Trme10826g00001 270 Pfam Protein tyrosine and serine/threonine kinase 131 261 IPR001245 GO:0004672|GO:0006468
Trme10826g00001 270 Gene3D Transferase(Phosphotransferase) domain 1 182 270 - -
Trme10826g00001 270 MobiDBLite consensus disorder prediction 1 16 - -
Trme10826g00001 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Trme10826g00001 270 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 89 270 IPR047117 -
Trme10826g00001 270 ProSiteProfiles Protein kinase domain profile. 95 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10826g00001 270 MobiDBLite consensus disorder prediction 1 57 - -
Trme10826g00001 270 SUPERFAMILY Protein kinase-like (PK-like) 132 269 IPR011009 -
Trme10826g00001 270 Coils Coil 98 102 - -
Trme10826g00001 270 SMART serkin_6 122 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10826g00001 270 Gene3D Phosphorylase Kinase; domain 1 125 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10826g00001 Trme-Chr10826 160 1656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10826g00001 93 270 Trihelix Transcription Factor Family AT1G23540 61.236 7.74e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme10826g00001 PK_Tyr_Ser-Thr 5.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10826g00001 - - gmx:100805872 320.857