Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108219g00001 TTAACATGGCCTATCCGTTTAAAGATTGCTAAAGGAATTGCAAGAGGGTTAAGCTTCCTTTACTCTGAATTTTCAACCTATGATTTACCTCATGGAAACCTTAAATCAAGCAATGTTCTACTAACTAATGAATATGAGCCACTTTTAGGTGATTTTGCTTTTCAACCACTAATCAATCCTAGCATTGCAGTACAATCAATGTTTGCATACAAAACACCAGATTACATTCAAAACCAGAAGCTTTCGCAGAAAGCCGATGTTTATTGCCTTGGAATCATCATTCTCGAAATCATTACAGGGAAATTCCCTTCTCAGTATCATAGTAATGGTAAAGGTGGGACTGATGTTGTTCAATGGGTCCTCACAGCAATTTCTGAGCGACGAGAAGCTGAATTAATTGATCCTGAGTTGAAAGATAATGCATCAAATTCAATCAATAATATGCTGCAGCTTCTCTTAATTGGTGCTGCTTGTACCGAAAGCAACCCGGAACAAAGAGTGCATATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACAACTCTAA 546 0.3773 LTWPIRLKIAKGIARGLSFLYSEFSTYDLPHGNLKSSNVLLTNEYEPLLGDFAFQPLINPSIAVQSMFAYKTPDYIQNQKLSQKADVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVLTAISERREAELIDPELKDNASNSINNMLQLLLIGAACTESNPEQRVHMKEAIRRIEEVQL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108219g00001 181 Pfam Protein kinase domain 8 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme108219g00001 181 Gene3D Transferase(Phosphotransferase) domain 1 1 181 - -
Trme108219g00001 181 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 180 IPR046959 -
Trme108219g00001 181 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme108219g00001 181 SUPERFAMILY Protein kinase-like (PK-like) 1 177 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108219g00001 Trme-Chr108219 76 621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108219g00001 1 180 Receptor kinase-like Gene Family AT5G20690 61.667 1.46e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme108219g00001 Pkinase 2.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108219g00001 - - gmx:100788667 302.367