Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1080g00001 ATGGACTGTAATAAAGAAGAGGCCTTAAGGGCCAAGTGTATTGCTGAAAAGAAAATGGAAAGCAAAGATTTCATAGGGGCTCGTACAATTGCCCTTAAGGCTCAGAAACTATATCCTGATCTGGAGAATATCGCTCAAATGCTTGTTGTTTGTGATGTGCATTGCTCTGCTGAGCAGAAATTACTGGGTAATACTAAGGTGGTGGACTGGTATAAAGTTCTACAAGTTGATCGCAATGATAATGATGTAATAATTAAGAAGCAATACAGGAAGTTTGCTCTCCAGCTTCATCCTGACAAAAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTGATTGGGGAAGCTCAGAGAGTTCTTTTGGATAGAGAAAAACGATCATCACTTAACATGAGCTTGAGCAGTTTTTCAATGAACAGAACTGCCATGCCATCTCATCATCAACGGAATGTTCCGGTGAATTTTAATACTGTGATGCAAACTAATGTCCGGCCCGTTTTCCCGAACTTAAATCCTCAGCAGCAACAACAGTCTAGGCAGCCAACTCAGCAGGGAGTTAATGGTGGTGTCCAGTCCCCTACATTTTGGACTATGTGCTCATTTTGTTCAGTTAAGTTTGAGTATTACAGGGCAGTTTTAAATAGATCTCTTCGCTGTCAACAGTGCAATAAGCCCTTCATTGCATATGAGATGGATCCGCAAAGTACAAAACCGGCAACCAATTCAAGTCAGAACCGGCAACCAACTCAGCAGAACAATACACCGAATCATGGTGCTTTTAAGTTTGGTGTTGGATCTCAAAGTAATGTCTTTGCTAAGAGGCCCAAAAAAGAATCTCATCATAAGAAAGGCTCTACTTCAAATGTCGCCGTGAAGCCAAATGGAAAGAGAAAGAGAAAGAATGTAGTAGAATCCAGTGAAAGTTCTATAGGCAGCACTGATTCTGAAGACGATACACTTTCTAATGACAATGGTTTTTCGGGTGTTCCTACTTCTAGAGACGAGCGTCCACGTAGATCTACACGACAAAAACACCAGGTTTCCTACAGGGAGAATGGAAGTGACGATGACGCCGAGTTAAAGCAACCTTTAAAACAGGGTAAGGAGAGTGGTTCGCCATATAGTGATGGTGAAAATAATGAGGAAACTGAAATGAATGATCAGAATGGTTTGGCTGCTGGTCTGAAAGATGGTAAGAAAGAGGCAAAAAAGAAGCAAAAAATTTATTCTGAAGAGAGCTCAGGAAATATAGATGTGAAAATTAAGGAGGTGGGAGGAAAAGAAACAGTGGGAAGCTCAAAGATTGATGAAGCTTCAGAGCAATCAGACCATTCAGATGGTTTTGTAGATGGTTTTGTTTATCCTGATCCAGAGTTCAGTGACTTTGATAAGGACAAAAAAGAGGAATGTTTCGCTTCCGGGCAGATTTGGGCTGTTTATGATGATATAGATGCCATGCCTAGATTTTATGCTATAATCAAAAAAGTTTTTTCTCCTGGATTTAAGTTGCAGATAACTTGGCTTGAGGCAGATCCAAATGACAAAGATGAATGCAATTGGATTGAGGAGAAACTGCCAAATGCGTGTGGGAAGTATAAACTTGGTAAGACTGTAACCACTAAAGATCAACCGATGTTCTCTCATCAGACTTTATGTGAAAAGATTGGCCGCACTACTTTTAAAGTGTATCCTAGAAAAGGAGAAACTTGGGCTCTTTTTAAGAATTGGGATATTAAATGGTATATGGATGCAAAATCTCATCAGAAGTATGATTTTGAATTTGTTGAGATATTGTCGGATTATGTTGAAGGCGCGGGAGTAATTGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTGAGCCTCTACTCTCGAATTACGGAGGGACGTAATTGCTCGTTTCAGATTCCACCAGCTGAGTTGTTCAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTAAGGAAAAAGCAGGCGTTCCTGTAGGATCTTATGAACTTGATCCTATATCCTTGCCGATGGAAGAGTTTGCTGCTACTGATGACGTGGAAGTAAAGGTTGAATCTACTGCCAAGGTTAATTTGGACAGAAGCAATTTGGTAGAGAAGAAGAAGGATCCCGTTGATCATATTGATGATGTTAGTGCTCCATCAGCTTCGGTCGCAGATTCTTTTGAAGTTCCAGACCCTTCGTTCTACCAATTTGATGATGAGAGGTCCCATGAAAAGTTTGAGGCTGGCCAGATTTGGGCATTTTATGGCGATGAGGATGAACTTCCGAAATATTACGGTCAGATTAAAGAGGTTAGGAGGATTGACTCAACAATTGAGTTGCAAGTAATTTATCTTACTGGCTGCTGGCGGCTACCTGAGAAAATTGTTAGATGGGATGATGAGGATATGATCATTTCCTGTGGAAGATTTAAAGTCAAGCCAAATGGTAAGCTCTGTACTTACCATAACACCAATTCTATTTCACATCAGGTGCATGCAAGTGTCGTTGGAAAGAATAAGTACTATGAAATTTATCCTCGTGTGGGTGAAATTTGGGCATTGTATAGGGGATGGACGACTAAACTCAAACGTTCTGATTTGAAAAACTGTGAGTATGACATAGTGGAAGTTACTGAAGAAGTTGATTCGTGGATAGATGTTTCATTTCTGGAGAAG 2670 0.4037 MDCNKEEALRAKCIAEKKMESKDFIGARTIALKAQKLYPDLENIAQMLVVCDVHCSAEQKLLGNTKVVDWYKVLQVDRNDNDVIIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDREKRSSLNMSLSSFSMNRTAMPSHHQRNVPVNFNTVMQTNVRPVFPNLNPQQQQQSRQPTQQGVNGGVQSPTFWTMCSFCSVKFEYYRAVLNRSLRCQQCNKPFIAYEMDPQSTKPATNSSQNRQPTQQNNTPNHGAFKFGVGSQSNVFAKRPKKESHHKKGSTSNVAVKPNGKRKRKNVVESSESSIGSTDSEDDTLSNDNGFSGVPTSRDERPRRSTRQKHQVSYRENGSDDDAELKQPLKQGKESGSPYSDGENNEETEMNDQNGLAAGLKDGKKEAKKKQKIYSEESSGNIDVKIKEVGGKETVGSSKIDEASEQSDHSDGFVDGFVYPDPEFSDFDKDKKEECFASGQIWAVYDDIDAMPRFYAIIKKVFSPGFKLQITWLEADPNDKDECNWIEEKLPNACGKYKLGKTVTTKDQPMFSHQTLCEKIGRTTFKVYPRKGETWALFKNWDIKWYMDAKSHQKYDFEFVEILSDYVEGAGVIVAYLAKLKGFVSLYSRITEGRNCSFQIPPAELFRFSHRVPSFKMTGKEKAGVPVGSYELDPISLPMEEFAATDDVEVKVESTAKVNLDRSNLVEKKKDPVDHIDDVSAPSASVADSFEVPDPSFYQFDDERSHEKFEAGQIWAFYGDEDELPKYYGQIKEVRRIDSTIELQVIYLTGCWRLPEKIVRWDDEDMIISCGRFKVKPNGKLCTYHNTNSISHQVHASVVGKNKYYEIYPRVGEIWALYRGWTTKLKRSDLKNCEYDIVEVTEEVDSWIDVSFLEK 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1080g00001 890 PRINTS DnaJ domain signature 105 125 IPR001623 -
Trme1080g00001 890 PRINTS DnaJ domain signature 71 89 IPR001623 -
Trme1080g00001 890 PRINTS DnaJ domain signature 89 104 IPR001623 -
Trme1080g00001 890 CDD DnaJ 69 122 IPR001623 -
Trme1080g00001 890 Pfam Domain of unknown function (DUF3444) 724 890 IPR024593 -
Trme1080g00001 890 Pfam Domain of unknown function (DUF3444) 452 656 IPR024593 -
Trme1080g00001 890 SUPERFAMILY Chaperone J-domain 65 138 IPR036869 -
Trme1080g00001 890 Pfam DnaJ domain 69 128 IPR001623 -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 428 444 - -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 234 263 - -
Trme1080g00001 890 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 305 329 - -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 368 386 - -
Trme1080g00001 890 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 890 - -
Trme1080g00001 890 SMART dnaj_3 68 125 IPR001623 -
Trme1080g00001 890 Gene3D DnaJ domain 67 184 IPR036869 -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 167 188 - -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 428 448 - -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 332 364 - -
Trme1080g00001 890 MobiDBLite consensus disorder prediction 233 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1080g00001 Trme-Chr1080 689 3358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1080g00001 4 234 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.177 1.83e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1080g00001 - - psat:127079111 1352.42