Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108052g00001 ACAGTTGTCTCCGTGGTAGCAATGGGAGGGCAGGGAAAAACAACTTTGGCAAAGCAAGTTTTTAACAACACAAAGGTCGTTCAACATTTTGACTGTCATGCATGGATCACAGTTTCTGAACAATCCAATCGAGAAGGACTGTTGAGGGACATGTTGCACAAGTTATACAAAGAGAAGGGAAAAGAGCCTCCTGAGGGAATTAATCAAATGGATTGTGACTCATTAGTTGATGAAGTGAGAAAATTCTTGCAACGAAAACCGTATGTTATCGCGTTCGATGATGTATGGAACAAACATTTTTGGAATGAAATTGAAGTAGCTATGATTGATAACAAAAATGGTTCTAAGATAATAATCACAACAAGGATTGTGGATGTTGTGAATGCTTGTAAGAAATTTTCTGGTGGAGTGCATAAACTGGAAGAATTAACCAAAGAAAAATCTTTGGACTTGTTCAATAAGAGGGCATTCCATGATTTGAAGGAATGTTGTCCGGAAAATCTTAAGGATATATCTTCCAAAATTGTTGAAAAATGCAAAGGATTACCACTAGCAATTGTGGTCATTGGAGATCTTTTATCTTGCAAAGATAGAGATGCATTTCAATGGTCTGAGTTTAGTGAAAATCTTAATTCAGAGTTAGAGAAAGAGTCAGAGAAACATT 664 0.363 TVVSVVAMGGQGKTTLAKQVFNNTKVVQHFDCHAWITVSEQSNREGLLRDMLHKLYKEKGKEPPEGINQMDCDSLVDEVRKFLQRKPYVIAFDDVWNKHFWNEIEVAMIDNKNGSKIIITTRIVDVVNACKKFSGGVHKLEELTKEKSLDLFNKRAFHDLKECCPENLKDISSKIVEKCKGLPLAIVVIGDLLSCKDRDAFQWSEFSENLNSELEKESEKH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108052g00001 221 Gene3D - 142 221 IPR042197 -
Trme108052g00001 221 PRINTS Disease resistance protein signature 82 96 - -
Trme108052g00001 221 PRINTS Disease resistance protein signature 2 17 - -
Trme108052g00001 221 PRINTS Disease resistance protein signature 179 193 - -
Trme108052g00001 221 PANTHER DISEASE RESISTANCE PROTEIN RP 2 209 IPR044974 GO:0006952
Trme108052g00001 221 Pfam NB-ARC domain 2 216 IPR002182 GO:0043531
Trme108052g00001 221 FunFam Probable disease resistance protein At1g61300 1 133 - -
Trme108052g00001 221 Gene3D - 1 134 IPR027417 -
Trme108052g00001 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 217 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108052g00001 Trme-Chr108052 1 664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108052g00001 3 198 WRKY Transcription Factor Family AT5G45050 25.000 2.11e-07 49.3