Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme108011g00001 ATGGTGAAATTCTTGAAGCCGAACAAGGCGGTGATCATTCTTCAAGGCCGTTACGCCGGCAAGAAAGCCGTAATCGTGAAGAATTTCGACGAAGGAACTCGGGAACGTGCTTATGGACACTGTTTAGTTGCAGGTATCAAGAAATATCCAGTAAAGGTTATTAAGAAAGATTCAGCGAAGAAAACTACGAAGAAATCGCATGTGAAAGCTTTCGTGAAGCTTGTGAATTATCAACATCTTATGCCAACTCGTTACACTCTTGA 263 0.4183 MVKFLKPNKAVIILQGRYAGKKAVIVKNFDEGTRERAYGHCLVAGIKKYPVKVIKKDSAKKTTKKSHVKAFVKLVNYQHLMPTRYTL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme108011g00001 87 Gene3D - 1 87 IPR038655 -
Trme108011g00001 87 CDD KOW_RPL27 6 87 IPR041991 -
Trme108011g00001 87 PANTHER 60S RIBOSOMAL PROTEIN L27 1 87 IPR001141 GO:0003735|GO:0005840|GO:0006412
Trme108011g00001 87 Pfam Ribosomal L27e protein family 52 87 IPR001141 GO:0003735|GO:0005840|GO:0006412
Trme108011g00001 87 SMART kow_9 4 31 IPR005824 -
Trme108011g00001 87 SUPERFAMILY Translation proteins SH3-like domain 2 86 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme108011g00001 Trme-Chr108011 402 664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme108011g00001 1 87 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 82.759 1.64e-50 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme108011g00001 K02901 - twl:119996769 154.451