Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1079330g00001 ATGAAGGCTGATGAGGATGTCAGAATGGTATCGGAAGACGCGCCTGTGATACTTGCGAAGGCCTGTGAAATGTTCATATCAGAGTTAACCATTCGTTCACGGAACCACAGTAAAACCACAACACTTCAGAAGAATGATATCGCAGCAGCAGTCGCAGGGACTAATACCTTTGATTTCCTGGTG 183 0.459 MKADEDVRMVSEDAPVILAKACEMFISELTIRSRNHSKTTTLQKNDIAAAVAGTNTFDFLV 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1079330g00001 61 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 51 IPR003958 -
Trme1079330g00001 61 Gene3D Histone, subunit A 1 61 IPR009072 GO:0046982
Trme1079330g00001 61 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 61 - -
Trme1079330g00001 61 SUPERFAMILY Histone-fold 1 60 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1079330g00001 Trme-Chr1079330 1 183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1079330g00001 1 61 CCAAT-HAP5 Transcription Factor Family AT1G54830 70.312 7.13e-26 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trme1079330g00001 CBFD_NFYB_HMF 3.3e-09 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1079330g00001 K08066 - msin:131257816 87.8113