Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10791g00001 ATGTATTCTTTGTATATTGAATTTTATGATGCGATGTCAGTGCCGATGGCAATTGCTCTCTCYGGACAACTACTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAGGCGGAAAAAAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAGTAGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACCGAGGCTAATCTCCGAGAGATTTTTGAGCCATTTGGTCAGATTGAAGTTGTACAACTGCCTCTTGACATGGAGACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTGCCCATCTCGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAGTTAGACATTGCTGGCAGGACTATAAAG 402 0.4328 MYSLYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAGVVGPYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLDIAGRTIK 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10791g00001 134 Gene3D - 58 134 IPR012677 -
Trme10791g00001 134 SUPERFAMILY RNA-binding domain, RBD 61 134 IPR035979 GO:0003676
Trme10791g00001 134 SMART rrm1_1 63 134 IPR000504 GO:0003723
Trme10791g00001 134 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 5 134 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trme10791g00001 134 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 134 IPR000504 GO:0003723
Trme10791g00001 134 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10791g00001 Trme-Chr10791 97 889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10791g00001 64 133 Eukaryotic Initiation Factors Gene Family AT3G16380 46.479 1.09e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10791g00001 K13091 - gmx:100802446 236.113