Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1077g00001 ATGAAATCACACCCTTTGATAGATGAATTCATTCTCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAAAAACTTCCAGGAGTGACAAGAGATGGATTAAGCAGACACTTTTTCCATAGACCATCAAAGGCATATACAACAGGAACAAGAAAGAGAAGAAAGATTCAAACAGAAGAATGTGACTTACAAGGAACATCATCAGGAGGAGAAACAAGATGGCATAAAACTGGTAAGACAAGACCTGTTATGGTTAATGGAAAACAAAAAGGTTGCAAGAAAATTCTTGTCCTCTACACTAATTTCGGGAAGAATCGAAAACCGGAGAAGACGAATTGGGTGATGCATCAATATCATTTAGGACAACATGAAGAAGAGAAAGAAGGAGAACTTGTTGTTTCAAAGATATTTTATCAGACACAACCAAGACAGTGTAATTGGTCTGATAATAATAATCATAGAATTGGTGCAACTGCAACAATAACTGGTGAAGGAAGTGGTGGAGGAGAAGCTAATAATAATTATGGAAGAAGAGATAGTGGAAGTGGAAGTACTTCTTCTAAGGAAATTGTAACTCATAATCACAGTCATGGTCATATTCATAGAGATGAAATGTCTGCTGTTGTTGGTGTCAATCCTTTAACAAGCTTCACAAATGCCTTGGATATTCAACACCTTAAATCCGATCATTTCGGCCTCCTCCCGTTTCGAAAAAGCACCTTCGATGAGGTACGCTACATATATTATCTAGAACTGACACTTTAA 771 0.3709 MKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGTSSGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDNNNHRIGATATITGEGSGGGEANNNYGRRDSGSGSTSSKEIVTHNHSHGHIHRDEMSAVVGVNPLTSFTNALDIQHLKSDHFGLLPFRKSTFDEVRYIYYLELTL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1077g00001 256 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 173 IPR044799 GO:0003700
Trme1077g00001 256 SUPERFAMILY NAC domain 5 141 IPR036093 GO:0003677|GO:0006355
Trme1077g00001 256 Gene3D NAC domain 1 145 IPR036093 GO:0003677|GO:0006355
Trme1077g00001 256 FunFam NAC domain-containing protein 73 1 145 - -
Trme1077g00001 256 ProSiteProfiles NAC domain profile. 1 141 IPR003441 GO:0003677|GO:0006355
Trme1077g00001 256 MobiDBLite consensus disorder prediction 161 193 - -
Trme1077g00001 256 Pfam No apical meristem (NAM) protein 3 122 IPR003441 GO:0003677|GO:0006355
Trme1077g00001 256 MobiDBLite consensus disorder prediction 161 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1077g00001 Trme-Chr1077 2046 3201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1077g00001 3 190 NAC Transcription Factor Family AT5G56620 68.750 2.31e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme1077g00001 NAM 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1077g00001 - - vvo:131603801 424.476