Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1076g00001 ATGATGAGTTTGAAAACTGATAAGCTTCAGTCTTGGCTTCAACTTTCTAATGGGGATTGGGAACTGGTGAAGATAATATCAACTTCTGGAACCGAATCTGTCATTTCACTGCCTGACGGGAATGTTTTAAAGGTGAAAGATGAAAGTTTGGTATCGGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCATCAGTTTTATACAACCTGCAACATAGATACAATCAAAATATGATCTATACAAAAGCAGGGCCTGTTTTGGTGGCAGTAAATCCCTTTAAGAAAGTTCCTCTGTATGGTATTGACTATATTCAAGCCTACAAGCGTAAAGCAATTGAAAGCCCTCATGTTTATGCAATTACAGACTCAGCCATCAGAGAGATGACACGAGATGAAGTTAATCAATCAATAATTATAAGTGGTGAGAGTGGAGCAGGAAAGACTGAGACAGCAAAAATAGCTATGCAATACCTTGCTGCCCTTGGTGGTGGAAGTGGAATAGAGCATGAAATATTAAAGACTAATCCAATACTAGAAGCCTTCGGTAATGGAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACATTTTTGTTAGAAAAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCACAATCTCTCAGGGAGAAGCTAAATCTACGAAGTGCGGAAGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTACTGGTGTTGATGATGCAGAAGAATTCCGCATAGTCACGGATGCTCTGGATGTTGTCCACATTAGCAAAGGAGACCAAGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATCGATAATGAAAATCATGTTCAAGCTGTTGAGGATGAGG 1018 0.3811 MMSLKTDKLQSWLQLSNGDWELVKIISTSGTESVISLPDGNVLKVKDESLVSANPDILDGVDDLMQLSYLNEPSVLYNLQHRYNQNMIYTKAGPVLVAVNPFKKVPLYGIDYIQAYKRKAIESPHVYAITDSAIREMTRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEHEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPQSLREKLNLRSAEDYKYLRQSNCYSITGVDDAEEFRIVTDALDVVHISKGDQENVFAMLAAVLWLGNISFTVIDNENHVQAVEDE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1076g00001 339 PANTHER MYOSIN 53 339 - -
Trme1076g00001 339 ProSiteProfiles Myosin motor domain profile. 59 339 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1076g00001 339 SMART MYSc_2a 53 339 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1076g00001 339 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 6 55 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trme1076g00001 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 332 IPR027417 -
Trme1076g00001 339 Gene3D Kinesin motor domain 27 336 IPR036961 -
Trme1076g00001 339 PRINTS Myosin heavy chain signature 185 212 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1076g00001 339 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1076g00001 339 PRINTS Myosin heavy chain signature 143 168 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trme1076g00001 339 Pfam Myosin head (motor domain) 61 333 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1076g00001 Trme-Chr1076 565 3214 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1076g00001 9 339 Myosins gene family AT1G50360 82.175 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1076g00001 - K10357 gmx:100782618 615.15