Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10766g00001 ATGTTCCGTTTGAACTGGGCTACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCGTGTTGCATGAAACTTTTGCTAGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAGGGCTATGGATTTGTCAGGTTTGGAGATGAAAACGAGAGATCTCAGGCCATGACTCAAATGAATGGCGTTTACTGTTCTAGCAGGCCCATGCGTATCGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAAGATCTTAGGCAAACTTTCTCCCAGTATGGTGAGATAGCATCTGTTAAGATACCTGTTGGAAAGGGCTGCGGTTTTGTGCAATTTGCAAACAGAAATAATGCTGAAGAGGCTTTGCAGAAGCTAAATGGGACAATGATCGGCAAGCAAA 571 0.4238 MFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFASSYPSVKAAKVVYDANTGRSKGYGFVRFGDENERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQTFSQYGEIASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10766g00001 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 93 IPR000504 GO:0003723
Trme10766g00001 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 189 IPR000504 GO:0003723
Trme10766g00001 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 101 IPR000504 GO:0003723
Trme10766g00001 190 SUPERFAMILY RNA-binding domain, RBD 23 189 IPR035979 GO:0003676
Trme10766g00001 190 MobiDBLite consensus disorder prediction 102 133 - -
Trme10766g00001 190 CDD RRM2_SECp43_like 21 100 - -
Trme10766g00001 190 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 3 189 - -
Trme10766g00001 190 Gene3D - 21 97 IPR012677 -
Trme10766g00001 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 190 IPR000504 GO:0003723
Trme10766g00001 190 SMART rrm1_1 23 97 IPR000504 GO:0003723
Trme10766g00001 190 SMART rrm1_1 128 190 IPR000504 GO:0003723
Trme10766g00001 190 FunFam Zinc finger CCCH domain-containing protein 4 113 190 - -
Trme10766g00001 190 Gene3D - 98 190 IPR012677 -
Trme10766g00001 190 MobiDBLite consensus disorder prediction 97 136 - -
Trme10766g00001 190 FunFam Polyadenylate-binding protein RBP47C isoform A 21 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10766g00001 Trme-Chr10766 1 1579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10766g00001 23 187 Eukaryotic Initiation Factors Gene Family AT4G34110 32.353 3.86e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10766g00001 - - gmx:100819523 344.739