Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1076493g00001 ATGGCAACCGATTCCCCAACCACCCTACCCATTCCTGACGTAATGAGAGCCTCAATTCGTCCAGATATCGTCAATTTCGTCCACTCCAACATTTCCAAAAACGCTCGTCAACCCTACGCCGTCAGCCGCCGTGCCGGACATCAAACCTCCGCCGAATCATGGGGAACCGGTCGTGCTGTCTCCCGTATCCCTCGTGTTGCTGGT 204 0.5539 MATDSPTTLPIPDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSAESWGTGRAVSRIPRVAG 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1076493g00001 68 MobiDBLite consensus disorder prediction 38 56 - -
Trme1076493g00001 68 SUPERFAMILY Ribosomal protein L4 8 67 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme1076493g00001 68 Gene3D - 2 68 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trme1076493g00001 68 PANTHER 60S RIBOSOMAL PROTEIN L4 6 68 IPR045240 -
Trme1076493g00001 68 MobiDBLite consensus disorder prediction 38 68 - -
Trme1076493g00001 68 Pfam Ribosomal protein L4/L1 family 11 66 IPR002136 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1076493g00001 Trme-Chr1076493 16 219 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1076493g00001 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G02870 76.471 1.53e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1076493g00001 K02930 - zju:107405050 129.413