Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme107568g00001 ATGAATGCAAAGTTAGGTGATTTTGGTTTGGCTAAGCTTTATGATCATGGTGAGAATCCAAGTACAACAAGGGTGGTTGGAACTATGGGATATTTAGCACCAGAGTTAACAAGAACAGGTAAACCAACAACAAGTTCTGATGTTTTTGCATTTGGGGCATTGTTGTTGGAGGTTGTTTGTGGAAGGAGGCCTATTGAGGCGAAAGCGTTGCCGGAGGAGCTTGTTTTGGTGGATTGGGTTTGGGATAAGTGGAGAGTAGGGGAAGTTATGGAGGTGGTTAGGTATTTGGAAGGGGAGGTGAAGTTGCCCGAGGTTGATGTGTTTGCGGGGAAAAAGGAGGG 341 0.4545 MNAKLGDFGLAKLYDHGENPSTTRVVGTMGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPIEAKALPEELVLVDWVWDKWRVGEVMEVVRYLEGEVKLPEVDVFAGKKEG 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme107568g00001 114 Pfam Protein kinase domain 3 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme107568g00001 114 SUPERFAMILY Protein kinase-like (PK-like) 1 97 IPR011009 -
Trme107568g00001 114 Gene3D Transferase(Phosphotransferase) domain 1 1 108 - -
Trme107568g00001 114 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme107568g00001 114 PANTHER - 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme107568g00001 Trme-Chr107568 51 505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme107568g00001 1 105 Receptor kinase-like Gene Family AT3G55550 67.925 1.24e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme107568g00001 Pkinase 3.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme107568g00001 - - sly:101247920 180.259