Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme107414g00001 AAGAGAATTTATGTCAACATATTTACTGGAGAGGCAGCTAAGAAATTTCCACAAGCAACACAGATGGCAAGAGGAGGAATTCTGGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTTTGATTCTAAGTAATCCAGGAAGGATGAAGTCAGATGACAGTGATGCAGAGAGCATATATGACAACATTTTATCAACTAAGAGGAGGAATGTTAACCCATATAATGTAGAGGGTGGCACTCTAATTGTTTGTCCCATGGCGTTATTGGGTCAGTGGAAGGTGAGATTTCTGTCTAATTAA 306 0.3987 KRIYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGRMKSDDSDAESIYDNILSTKRRNVNPYNVEGGTLIVCPMALLGQWKVRFLSN 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme107414g00001 101 Pfam SNF2-related domain 3 97 IPR000330 GO:0005524|GO:0140658
Trme107414g00001 101 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 22 95 - -
Trme107414g00001 101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 99 IPR027417 -
Trme107414g00001 101 Gene3D - 6 100 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme107414g00001 Trme-Chr107414 119 527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme107414g00001 3 95 RAD5 or RAD16-like Gene Family AT5G43530 58.763 9.03e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme107414g00001 SNF2_N 2.2e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme107414g00001 K15505 - psat:127103070 166.392