Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme107385g00001 ATGAAAAATGCAAGGTCAAAGAAGAACTTGCAGAAAGTTGCTAGCAATGAAGAGATTGATAATGGAGAATCAAATGGAAATAGTTCTAGTAGTAACATTTATGAGGATGATAATGGTTCTCAAGAAAATAGTGGAGGAACTACTCTCAACTCAAATGGGAAGACAAGAGCTAGTAGAGGTTCAGCAACAGATCCCCAAAGTCTATATGCAAGGAAAAGAAGAGAGAGAATAAATGAGCGACTAAGAATCCTACAGAACCTTGTACCAAACGGAACAAAG 279 0.3728 MKNARSKKNLQKVASNEEIDNGESNGNSSSSNIYEDDNGSQENSGGTTLNSNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTK 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme107385g00001 93 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 93 - -
Trme107385g00001 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 93 IPR011598 GO:0046983
Trme107385g00001 93 MobiDBLite consensus disorder prediction 1 76 - -
Trme107385g00001 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 92 IPR036638 GO:0046983
Trme107385g00001 93 Gene3D - 51 93 IPR036638 GO:0046983
Trme107385g00001 93 MobiDBLite consensus disorder prediction 15 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme107385g00001 Trme-Chr107385 8 402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme107385g00001 36 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 79.310 5.71e-26 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme107385g00001 - - cam:101488422 119.012