Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme107339g00001 TCTTTCCGGCCACCGGAACTTCGAATCGCTATTATGGAAGAATCTTCTACAACCTCTCCACCACCAGCGATTAAAAGCTGGGCCGATCAAGCAGACGACGAAGATGCCAATCCATCCTCAAGCTCTGCCATCGAAACCGAAACACCTTCGCTCAATGAATTAACACTCGACGAGAACAAGAAATCGTCTTCTAAAATGTTAGACGATCCCGATGACTCCAACATTCAAGCGGGACTCTATGTAGAGATGAAGTTTCAAAAACCTAGCAAAATTCAAGCTGTAAGCTTGCCAATGATTCTTAATCCTCCACATAGGGATTTGATAGCGCAGGCACATAATGGTTCAGGAAAAACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCAACTTTGCAAGTTCCTCAAGCACTTTGCATTTGCCCTACTAGAGAGTTAGCTATTCAGGTTAGATGCTTTGCCCGTTTGATTAAACAATTTAGTTAA 489 0.4315 SFRPPELRIAIMEESSTTSPPPAIKSWADQADDEDANPSSSSAIETETPSLNELTLDENKKSSSKMLDDPDDSNIQAGLYVEMKFQKPSKIQAVSLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPTLQVPQALCICPTRELAIQVRCFARLIKQFS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme107339g00001 162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 162 IPR014001 -
Trme107339g00001 162 Pfam DEAD/DEAH box helicase 90 151 IPR011545 GO:0003676|GO:0005524
Trme107339g00001 162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 155 IPR027417 -
Trme107339g00001 162 MobiDBLite consensus disorder prediction 33 57 - -
Trme107339g00001 162 Gene3D - 33 162 IPR027417 -
Trme107339g00001 162 PANTHER RNA HELICASE 45 153 - -
Trme107339g00001 162 MobiDBLite consensus disorder prediction 1 72 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme107339g00001 74 150 Eukaryotic Initiation Factors Gene Family AT3G19760 44.156 1.28e-10 57.0