Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme107338g00001 ATGAAGCAAGTTCTAGTGGATTCAGTGATAGACACTTACAAGCATGTTAGTAATTCTCTGTCAATGCTCCCTGAGCCTGAGGAAAGAGCTACGAAAGGACGTGGTAACCGGCGTTTAATGGATGCTCTAACGTGGTTATCAAGCAAAGATCACCGCCGGTTCTTGCAAAGTACAAATGATGTAGTTGTGGCTGCAGATGGAAGTGGAAACTTTAGCACCATCAATGAAGCCATTAACTTTGCTCCAAATAACAGCTATGATAGGATAATAATCTATGTGAAAGAAGGGGTGTATGAGGAAAATGTTGAAATCTCAAGTGATAAAACCAATATTGTTTTACTTGGTGATGGAAGTGATGTCACTCTCATTACTGGCAATAGAAGTGTTGTTGATGGCTGGACCACTTTCAGATCTGCAACTTTAG 424 0.4057 MKQVLVDSVIDTYKHVSNSLSMLPEPEERATKGRGNRRLMDALTWLSSKDHRRFLQSTNDVVVAADGSGNFSTINEAINFAPNNSYDRIIIYVKEGVYEENVEISSDKTNIVLLGDGSDVTLITGNRSVVDGWTTFRSATL 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme107338g00001 141 Gene3D - 55 141 IPR012334 -
Trme107338g00001 141 Pfam Pectinesterase 60 141 IPR000070 GO:0030599|GO:0042545
Trme107338g00001 141 PANTHER PECTINESTERASE 12 141 - -
Trme107338g00001 141 SUPERFAMILY Pectin lyase-like 55 140 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme107338g00001 Trme-Chr107338 69 492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme107338g00001 1 141 Carbohydrate Esterase AT2G26440 59.615 1.70e-51 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme107338g00001 - K01051 gmx:102666380 194.126