Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1072414g00001 ATGGCACCTTTTGTATTGACAGTGTCACAAGATGGAACAGGAAACTACAGAACAGTACAAGAAGCCATTGATGCGGTGCCACTCGGCAACACTCGCCGGGTGGTGATAAGGATATCACCGGGAATCTACCGGCAACCACTATATGTTGCAAAGACTAAGAACTTCATCACTTTCGCTGGT 180 0.4722 MAPFVLTVSQDGTGNYRTVQEAIDAVPLGNTRRVVIRISPGIYRQPLYVAKTKNFITFAG 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1072414g00001 60 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 60 - -
Trme1072414g00001 60 Pfam Pectinesterase 7 60 IPR000070 GO:0030599|GO:0042545
Trme1072414g00001 60 Gene3D - 2 60 IPR012334 -
Trme1072414g00001 60 SUPERFAMILY Pectin lyase-like 2 60 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1072414g00001 Trme-Chr1072414 1 180 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1072414g00001 5 60 Carbohydrate Esterase AT5G47500 44.643 5.14e-14 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1072414g00001 K01051 - gmx:100810259 105.916