Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10711g00001 ATGGTGCATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTGAAAAATATGGACTAACCTGGAAAGGATTCAGATATTTTAAAAATGACAGAGATCGAAGGGATTTTATCACATGTGGTGCGGCTGCTGGTGTTGCTGGTGCCTTTCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCGGCTTCTTGGTCCCCCTCTCTTTCTCTACTGTGGAGGAGTGCTCTTTTGTGGAGAACATTTTTCACTACAGCTGTAGTAGCTGTAGTGTTGAGAGGTTTCATGGAATATTGCAAAGGCGAAAAATGTGGTCTTTTTGGGGAAGGAGGTTTGATAATGTTTGATGTCAATTCAGTAAAGCCTGCATACAGCATACCTGACTTACTGGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTATAATTATCTCGTGGATAAGGTCCTTCGCACTTACAGCATCATTAATGAGAAAGGTCCTATTTTTAAAATAATACTTGTGATGATTATATCGTTTTTGACCTCTTGCTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATCCCCTGTCCTTCTCATGTCGGGGATCAGTGCCCAACCGTAGGGCGCTCTGGACACTACAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTGGCCTCTCTCTTTTTTACCACCAATGATGATGCTATCCGCAACCTTTTTATTGCTGGCTCTGACAAAAGATTCCTGCTCTCCAGTCTCCTAATATTCTTTGTGGCAATTTACTTCCTCGGAATCATCACTTACGGCATTGCAATTCCGTCAGGGCTCTTTATTCCGGTGATACTTGCAGGGGCCTCATATGGTCGTGTTGCAGGAAGTTTGTTAAGTCCATTCACAGTTCTGGATGTGGGCTTGTTTGCACTCTTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTTTCTCTTTGCGTCATACTTCTTGAACTTACTAACAACCTCCTCATGCTACCATTGGTCATGTTGGTTCTCCTTATCTCAAAGTCTGTGGCAGATTGTTTTAACAAAGGCGTTTATGATCAGATAGTGGAAATGAAGGGGTTGCCTTATTTGGAAGCACACGCAGAACCGTACATGAGGCAGTTAGTTGCAG 1174 0.4353 MVHTGACIANLLGQGGSEKYGLTWKGFRYFKNDRDRRDFITCGAAAGVAGAFRAPVGGVLFALEEAASWSPSLSLLWRSALLWRTFFTTAVVAVVLRGFMEYCKGEKCGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYSIINEKGPIFKIILVMIISFLTSCCSFGVPWLSKCIPCPSHVGDQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSDKRFLLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEAHAEPYMRQLVA 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10711g00001 391 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 391 - -
Trme10711g00001 391 PRINTS Chloride channel signature 365 379 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme10711g00001 391 PRINTS Chloride channel signature 45 64 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme10711g00001 391 PRINTS Chloride channel signature 277 297 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme10711g00001 391 PRINTS Chloride channel signature 309 325 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme10711g00001 391 PRINTS Chloride channel signature 327 346 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Trme10711g00001 391 SUPERFAMILY Clc chloride channel 1 381 IPR014743 -
Trme10711g00001 391 Gene3D Clc chloride channel 1 379 - -
Trme10711g00001 391 PRINTS Plant CLC chloride channel signature 87 97 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme10711g00001 391 PRINTS Plant CLC chloride channel signature 229 245 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme10711g00001 391 PRINTS Plant CLC chloride channel signature 105 112 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme10711g00001 391 PRINTS Plant CLC chloride channel signature 73 81 IPR002251 GO:0005247|GO:0006821|GO:0016020
Trme10711g00001 391 Pfam Voltage gated chloride channel 1 359 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10711g00001 Trme-Chr10711 60 1669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10711g00001 1 391 Ion Channels AT5G49890 78.571 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10711g00001 K05016 - twl:119982419 578.941