Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme107110g00001 | ATGCCTCCTGTGCCGCATTTTGTTAGAGCAGACATGCTGCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGACTTAGAGCCATGGAGTGTGCCAGAAGTACTGCGTCCACTATATGAATCACCAACAGTGCTGGCTCAGAAGACTACTATGGCGGCCTTACGTCATCTAAGGCAGATTTCGCATGAAGTTTCTCAGCCCAACGTCACTGGGTGGGGTAGACGACCAGCAGCTCTGCGCGCACTTAGCCAGAGATTGAGCCG | 296 | 0.5135 | MPPVPHFVRADMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESPTVLAQKTTMAALRHLRQISHEVSQPNVTGWGRRPAALRALSQRLSR | 99 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme107110g00001 | 99 | SUPERFAMILY | Bet v1-like | 1 | 71 | - | - | |
| Trme107110g00001 | 99 | Gene3D | - | 1 | 77 | IPR023393 | - | |
| Trme107110g00001 | 99 | ProSiteProfiles | START domain profile. | 1 | 52 | IPR002913 | GO:0008289 | |
| Trme107110g00001 | 99 | Pfam | START domain | 2 | 70 | IPR002913 | GO:0008289 | |
| Trme107110g00001 | 99 | Coils | Coil | 90 | 99 | - | - | |
| Trme107110g00001 | 99 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 | 1 | 99 | IPR044830 | GO:0003700 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme107110g00001 | Trme-Chr107110 | 46 | 592 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme107110g00001 | 1 | 99 | Homeobox Transcription Factor Family | AT4G32880 | 86.869 | 5.37e-57 | 186 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme107110g00001 | K09338 | - | gmx:100819365 | 195.667 |