Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme107013g00001 ATGTTAACAGCAACCGAAGAGGAAGCTGCAGAGGCGTACGACATTGCAGCCATAAAATTCCGAGGTGCAAATGCAGTCACAAACTTTGAGATGAACAGATACGATGTGGATGCAATAATGCAGAGTTCTCTTCCGGTTGGTAGTACAGCGAAACGCATGAAGCGCTCTCTCGGGTCTGAACAGAAAGCTTCTGTTACTGGAAATATTCAGCAGAACAACGCTGAACAGTATGCGGCATGCCTGATCAATAGCAACAAAAGCAGCAACATTAATTTCTCAACCATTCCGCATCAGCTGCCAGCTGCACTGAGTACRGTCCCTTATGGAATGGTTCCGTATGATTCAACTCCTTCGGCTTATTATCATCACACCCTCTTCCAACATTTCAATTCTGATACCAATGATGGCGCTGCAGAATCTGTTGTGAATTCCACCAATGCAACAAATGCTGGACTCAATGCCATGCCACCAACATCAGCAGCTGAGTTCTATTTATGGCCTAATCAGTCTTA 512 0.4492 MLTATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVDAIMQSSLPVGSTAKRMKRSLGSEQKASVTGNIQQNNAEQYAACLINSNKSSNINFSTIPHQLPAALSTVPYGMVPYDSTPSAYYHHTLFQHFNSDTNDGAAESVVNSTNATNAGLNAMPPTSAAEFYLWPNQS 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme107013g00001 170 Gene3D AP2/ERF domain 4 32 IPR036955 GO:0003700|GO:0006355
Trme107013g00001 170 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 105 - -
Trme107013g00001 170 ProSiteProfiles AP2/ERF domain profile. 1 30 IPR001471 GO:0003700|GO:0006355
Trme107013g00001 170 SUPERFAMILY DNA-binding domain 5 31 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme107013g00001 Trme-Chr107013 1 512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme107013g00001 18 170 AP2-EREBP Transcription Factor Family AT5G65510 39.744 1.52e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme107013g00001 K09285 - gmx:100775390 165.236