Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme106g00001 ATGGCTGCAACTGCAACTTTGGTTGGAGGTGCATTTCTCTCTGCTTCTGTCCAAACCATGATTGACAAATTAACTTCAGCTGAGTTTCGTGATTACATCAACAACAAGAAGCTGAATGCCTCTCTCTTGAAGCAGTTACAAACAACGCTGTTGATTCTTCAGGCCGTGCTAGATGATGCAGAAGAGAAGCAAATCAACAATCCTGCAGTTAAACAATGGCTTGATGACTTGAAAGATGCAATTTTTGATGCTGAGGATTTGCTGAACCAAATTAGTTATGAATCACTGCGATGCAAGGTGGAGAATACACAAGCTGGAAAGAAACCTAATCAGGTGTGGAACTTCCTTTCATCTCCTTTTAAAAACTTATATGGAGAGATCAATACACAAATGAAGATCATGTGTGATAGCCTTCAACTTTTTGCACAACATAAGGATATCCTTGGTTTGCAAAGTAAAACTGGTAAAGTTCCTCGTAGAATCCCTTCAAGTTCAGTTGTTAATGAATCTTTCATGGTTGGTAGGAAGGATGATAAAGAGACAATAATGAACATGTTGCTATCAGAGAGCGGCACTAGCAATAACAATATCGGTGTTGTTGCAATATTAGGCATGGGAGGTGTTGGTAAAACAACACTTGCGCAACTAGTTTACAATGATGAAAAAGTTCAACAACATTTTGATATCAAAGCTTGGTCTTGTGTATCAGAAGATTTTGATATTTTGAGAGTAACCAAAACTCTCCTTGAATCTGTCACTTCAAGACCATGTGAAAGCAACAATCTTGATTTTCTTCGAGTTGAACTAAAGCAAAATTTGAGAGGCAAAAGATTTTTGTTTGTGTTGGATGATCTATGGAATGACAATTACAATGATTGGGATGAACTTGTAACTCCCATGGTTAGAGGAAATTGTGGAAGCAGGGTCATCATCACAACACGCCAACAAAAAGTTGCAGAAGTTGCATGCACTTTTCCGATTCATAAATTAGAACTTCTATCAGATGAAGACAGTTGGTCTTTACTCTCAATGCATGCATTTGGAAGTGGAGACTGTTGTAGCAATAAATGGCCAAACCTAGAAGCAATTGGTAGAAAGATTGCCAAAAAGTGTGGTGGATTGCCCATAGCTGCCAAAACACTAGGAGGACTATTGCGTTCGAAAGTAGATACTAAAGAGTGGACTGCAATTCTGAACAGTGACATTTGGAGCTTACCAAATAATAATATTTTGCCGGCATTGCTTCTGAGTTATCAATATCTCCCCTCTCAATTGAAAAGATGTTTTGCCTATTGTTCCATTTTTCCGAAGGATTATCCACTTGATAGGAAGCAATTGGTTTTGTTGTGGATGGCAGAAGGCTTCCTTGATCATTCTCAAGATGAAAAATCCATGGAAGAAGTAGGTGAAGACTGCTTTGTTGAGCTGTTATCCAGATCATTGATTCAGCAACTGAGTGGTGATTCTAGAGAACAAAAGTTTGTCATGCATGACCTTGTTAATGATTTAGCTACAATCGTATCTGGTAAAAGTAGTTACAGACTTGAATGTGGGGGTGTCATCTCTGAAAACGTTCGTCATTTGTCATATGTTCAAGAACAATATGACATTTCCAAGAAGTTTAAGATTTTCTACAAATTGAAATGCTTGAGAAGCTTCTTACCCATTGGCTCCTGGAGGACGCACAATTACTTATCTCAAAAGGTTGTTGATGACTTGCTACCCACACTTGGAAGTTTGCGTGTGTTATCATTATCAAAATATTGCAACATTACCATGCTACCAGATTCAATTGGCAATTTGGTGCAGCTGCGCTATCTAGATCTTTCTCACACCAAAATTAAAACATTGCCTGACACAATATGCAACCTCTCCTATTTGCAAACCTTGAATTTAGCATCGTGCATACATCTCACTGAATTGCCAGAACACGTCGGAAAGTTGATTAATTTACGTCACCTTGATCTCAATTTGACGAACATAGCCGAGATGCCAAAGCAAATTGTTGAACTAGAAAATCTGCAAACTCTAAGTATTTTTGTAGTAGGCAAGAAAAATGTTGGTTTAAGTGTCAAAGAGCTTGGGAGGTTTCGTAAGCTACGAGGAAAATTAGTCATCAAGAACTTGAATAATGTGGTTGATATTGAGGAGGCATGGGATACCAATTTGAAGAGCAAAGAACATATTGAGGATTTAACGCTACATTGGGGAGATGAAACTGATGACTCGGTTAAAGGGAAAGATGTGCTAGATATGTTACAACCATCAGGAAACCTTAAGAAAATGAGCATTAAGTTGTATGGTGGGACTAGCTTTCCAAATTGGTTGGGAAATTCTTCATTTTCTAACATGGTGTCTCTTAGCATCAGTAATTGTGCTTATTGTGTGACACTTCCATCATTAGGGAAGCTACCTTCTCTCAAGGACTTACAAATATATGATATGAAGATATTGGAGACAATTGGCCCTGAGTTCTATGGCATGGAAGGACGAGGTTCCAATTCTTCATTTCAACCATTTCCATCCCTTGAGAAGCTAGTATTTGAGAACATGCCAAATTGGAAGCAATGGCTTCCCATTCAAGATGGCATATTTCCATTTCCTCGTCTTAAAACTCTGATGATATTTAAGTGTTCTGAACTGAGGGGACATTTGCCTAGTCATCTTTCTTCCATAGAAGATATTGATTTACATGGTTGTGATCGACTCTTGGCAACACCACATACTCTGCATTGGCTCTCATCAGTAAAAAATATAAATATTATGGGAGATTTACTTTCTACTGAAAGTTCTCAATGTTCATGGCTTGAGAGTGATTCCTCGTGTCTGCTGCAGGGCATAAGGATCATTTTCTTTGATACAATTTTCTCGCTGCCCAAATTGATTATGAGAAGCACTTGTCTTCAATACTTGGATCTCTTTAGTATTCCATCTCTCACTACATTCCCAGTGGATGGTCTACCCACTTCATTGAAGTCACTTTATATTAGTGGGTGTAATAAGTTATCCTTCCTTCCTCCTGAAACACATAAAAATTACACATCACTTTTACATTTGGCATTGGAGAATAGTTGTGATGCACTTACTTCCTTCCCACTGGATGGTTTTCCTATGCTCCAATCGCTTTACTTACAAAATTGTAGGAGTCTGGAATCCTTTTTTATCTCAGAAAGTTCTTTACATCGCCCCTCAACACTCCAAACACTTTCCGTCTCTGGCTGTGACAAACTTAGATCATTGCCTCAACGGATGGGCACCCTCACCACACTTGAACAAATGACTCTGCTTGATCTTCCACAACTGGAGTTGCCACTATGTGAAGGATCTTTCCTACCACCCAAATTACGATCAATTTCTATTATATCTGTGAGAAAAACAACTTTGCCTGTCACCAAATGGGGTCTTCAACGCCTCACTGCTCTTTCCAAATTGAGTATTGGAGGAGATGACAATGATGATATTGTTAACAGCTTGCTGAAGGTGCCGATGCTGCCAATCTCCCTCGAGTTTCTTGAAATCAATAATCTCTCTAAAATAAAATCATTAGAAGGAAAAGGGATTCGACACCTCTCTTCTCTCAAAACACTTTCTTTTCTCAATTGTCGAAGGCTGGAGTCCTTGGCAAAGGTCACGTTACCTTCTTCTCTCGAGACACTTGAATTTAAGGATTGTCTACGACTCGAGTCATTACCTGAAGACAATCTCCCTTCCTCTCTTGACCTATTGAACATCGAACGTTGCCCTTTGTTAGAAGAAAGTGTGAAGCAAACATTTTCAAGATACAACAAATGCTTTGATTCAACAGATCCTGCTGTAGTGGAATAA 3825 0.388 MAATATLVGGAFLSASVQTMIDKLTSAEFRDYINNKKLNASLLKQLQTTLLILQAVLDDAEEKQINNPAVKQWLDDLKDAIFDAEDLLNQISYESLRCKVENTQAGKKPNQVWNFLSSPFKNLYGEINTQMKIMCDSLQLFAQHKDILGLQSKTGKVPRRIPSSSVVNESFMVGRKDDKETIMNMLLSESGTSNNNIGVVAILGMGGVGKTTLAQLVYNDEKVQQHFDIKAWSCVSEDFDILRVTKTLLESVTSRPCESNNLDFLRVELKQNLRGKRFLFVLDDLWNDNYNDWDELVTPMVRGNCGSRVIITTRQQKVAEVACTFPIHKLELLSDEDSWSLLSMHAFGSGDCCSNKWPNLEAIGRKIAKKCGGLPIAAKTLGGLLRSKVDTKEWTAILNSDIWSLPNNNILPALLLSYQYLPSQLKRCFAYCSIFPKDYPLDRKQLVLLWMAEGFLDHSQDEKSMEEVGEDCFVELLSRSLIQQLSGDSREQKFVMHDLVNDLATIVSGKSSYRLECGGVISENVRHLSYVQEQYDISKKFKIFYKLKCLRSFLPIGSWRTHNYLSQKVVDDLLPTLGSLRVLSLSKYCNITMLPDSIGNLVQLRYLDLSHTKIKTLPDTICNLSYLQTLNLASCIHLTELPEHVGKLINLRHLDLNLTNIAEMPKQIVELENLQTLSIFVVGKKNVGLSVKELGRFRKLRGKLVIKNLNNVVDIEEAWDTNLKSKEHIEDLTLHWGDETDDSVKGKDVLDMLQPSGNLKKMSIKLYGGTSFPNWLGNSSFSNMVSLSISNCAYCVTLPSLGKLPSLKDLQIYDMKILETIGPEFYGMEGRGSNSSFQPFPSLEKLVFENMPNWKQWLPIQDGIFPFPRLKTLMIFKCSELRGHLPSHLSSIEDIDLHGCDRLLATPHTLHWLSSVKNINIMGDLLSTESSQCSWLESDSSCLLQGIRIIFFDTIFSLPKLIMRSTCLQYLDLFSIPSLTTFPVDGLPTSLKSLYISGCNKLSFLPPETHKNYTSLLHLALENSCDALTSFPLDGFPMLQSLYLQNCRSLESFFISESSLHRPSTLQTLSVSGCDKLRSLPQRMGTLTTLEQMTLLDLPQLELPLCEGSFLPPKLRSISIISVRKTTLPVTKWGLQRLTALSKLSIGGDDNDDIVNSLLKVPMLPISLEFLEINNLSKIKSLEGKGIRHLSSLKTLSFLNCRRLESLAKVTLPSSLETLEFKDCLRLESLPEDNLPSSLDLLNIERCPLLEESVKQTFSRYNKCFDSTDPAVVE 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme106g00001 1274 Gene3D - 16 133 - -
Trme106g00001 1274 Gene3D - 332 416 IPR042197 -
Trme106g00001 1274 SMART LRR_typ_2 648 671 IPR003591 -
Trme106g00001 1274 SMART LRR_typ_2 577 600 IPR003591 -
Trme106g00001 1274 SMART LRR_typ_2 601 624 IPR003591 -
Trme106g00001 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 432 IPR027417 -
Trme106g00001 1274 FunFam Probable disease resistance protein At1g61300 156 324 - -
Trme106g00001 1274 Gene3D Ribonuclease Inhibitor 1108 1264 IPR032675 -
Trme106g00001 1274 Gene3D Ribonuclease Inhibitor 542 944 IPR032675 -
Trme106g00001 1274 ProSiteProfiles Leucine-rich repeat profile. 603 624 IPR001611 GO:0005515
Trme106g00001 1274 Pfam NB-ARC domain 177 399 IPR002182 GO:0043531
Trme106g00001 1274 SUPERFAMILY L domain-like 946 1253 - -
Trme106g00001 1274 Gene3D - 154 324 IPR027417 -
Trme106g00001 1274 Coils Coil 43 63 - -
Trme106g00001 1274 Gene3D Ribonuclease Inhibitor 945 1107 IPR032675 -
Trme106g00001 1274 PRINTS Disease resistance protein signature 371 385 - -
Trme106g00001 1274 PRINTS Disease resistance protein signature 272 286 - -
Trme106g00001 1274 PRINTS Disease resistance protein signature 199 214 - -
Trme106g00001 1274 PRINTS Disease resistance protein signature 887 903 - -
Trme106g00001 1274 PANTHER DISEASE RESISTANCE PROTEIN RP 46 870 IPR044974 GO:0006952
Trme106g00001 1274 SUPERFAMILY L domain-like 495 933 - -
Trme106g00001 1274 FunFam Probable disease resistance protein At1g63360 418 506 - -
Trme106g00001 1274 Gene3D - 417 506 IPR036388 -
Trme106g00001 1274 Pfam Rx N-terminal domain 13 104 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme106g00001 Trme-Chr106 1774 5828 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme106g00001 591 686 WRKY Transcription Factor Family AT4G12020 42.268 1.49e-11 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme106g00001 - - tpra:123915821 1532.31