Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10698g00001 ATGAAAGTGAATAAATATATGACTCGATCATTTTCGGTTCCGGTTAATGTCAAGGCTACTAATTTAAGGCCTACAGATTCTAGGCGTCTGGTTCGTGTAATTTCAGTAAGACCACATCCAGCAACTACTGATGACAATTCAACTCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCGGAAGGAGGAGATACTCTTAGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAACAGGATGTCCGGAACCTTTCAGTAACACTCTTGAAAATTTCTAGCCCTCCAACTGTTGTTCGGCAGACATTGACTGCATCGCAGCAGAGAGCAGTAACTAATTACAGGATCTGGCAGGATGTACCAGTACTTGTGTTGGTCAGCATGCTTGCGTACTTTTGCTTTCTGGAGGAACTACTG 540 0.4278 MKVNKYMTRSFSVPVNVKATNLRPTDSRRLVRVISVRPHPATTDDNSTRSDSMQEIVIEDASEDIPEEEAVCRICLVELAEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLSVTLLKISSPPTVVRQTLTASQQRAVTNYRIWQDVPVLVLVSMLAYFCFLEELL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10698g00001 180 PANTHER OS02G0165000 PROTEIN 4 180 - -
Trme10698g00001 180 CDD RING_CH-C4HC3_MARCH 72 120 - -
Trme10698g00001 180 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Trme10698g00001 180 SUPERFAMILY RING/U-box 68 123 - -
Trme10698g00001 180 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Trme10698g00001 180 SMART ringv_2 71 120 IPR011016 GO:0008270
Trme10698g00001 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 129 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10698g00001 Trme-Chr10698 55 1501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10698g00001 65 176 C3H Transcription Factor Family AT5G05830 34.426 2.59e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10698g00001 - - gmx:100779396 278.1