Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1066964g00001 GTCGATGTGCAGCAGAAGATTCTTAACAAGGAAGGGATCCCATGTAAAGATCAACGTCTGATCTTTTCCGGTAAGCAACTAGAAGAAAATCAGACCCTTGCCGATTACAACATCACAGAGAAGTCAACCATCCACCTTGTCCTCCGCATGATTGGGGACTAG 162 0.4568 VDVQQKILNKEGIPCKDQRLIFSGKQLEENQTLADYNITEKSTIHLVLRMIGD 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1066964g00001 53 PANTHER UBIQUITIN 2 50 - -
Trme1066964g00001 53 SMART ubq_7 1 49 IPR000626 GO:0005515
Trme1066964g00001 53 ProSiteProfiles Ubiquitin domain profile. 1 53 IPR000626 GO:0005515
Trme1066964g00001 53 PRINTS Ubiquitin signature 30 51 IPR019956 -
Trme1066964g00001 53 PRINTS Ubiquitin signature 9 29 IPR019956 -
Trme1066964g00001 53 SUPERFAMILY Ubiquitin-like 2 52 IPR029071 -
Trme1066964g00001 53 Pfam Ubiquitin family 3 50 IPR000626 GO:0005515
Trme1066964g00001 53 Gene3D - 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1066964g00001 Trme-Chr1066964 1 162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1066964g00001 2 52 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 64.706 4.66e-18 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1066964g00001 - K02927 vg:80527053 73.9442