Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10647g00001 TTGGACTTGTCTTATAACAATCTCTATGGTGAGGTTCCCATAGGAGGTGTGTTTAGCAATGTCACGGCAATTTCATTAACTGGAAACAAGAATCTTTGTGGAGGAATACCTCAATTGCAGCTTTCCCCATGCTTCAGGGTGCCCTCTAAGAAATACAAAAGATCTCCCAAAAAGAAACTTATTCTCATCAGTGTAATTGGTGGGGTTTTGATCTGTTCTGTAGCCTTTATAATTCTCCACTTTCTCACAAGAAAGCCCGAAAGGCTACCTTCCTCACTTTCACTGAAAAATAGGTTATTTAGAGTTACGTATAGAGAGCTACATGAAGCAACCAATGGATTTTCTTCATCCAATTTGATAGGATCAGGAAGCTTTAGCTCTATTTACAAAGGATCTCTTGTCAACTTTGAAAGACCTATTGTTGTAAAGGTGTTAAATCTTCATATACATGGAGCAACAAAGTGTTTCATGGCGGAATGCAAAGCTCTAGGAAAGATGAAGCACCGGAATCTTGTCAAAATCGTAACTTGTTGTTCAAGTGTTGATTATAATGGCAAAGATTTCAAGGCTATTGTTTTTGAGTACATGCCTAATGGGAGTCTAGAAAAGATGTTGCATGATAATGACGGGTCTGGAAATCATAATCTCAACCTCACACAAAGGGTAGACATTGCTCTTGATGTTGCCCGTGCACTTGATTATCTACACAATGATACAGAGCAAGTTGTAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGACGATGACTTTGTAGCCCACTTGGGAGACTTTGGCTTAGCTAGGCTCATTCATGGAGGGATAGGACATTCAACTAATGATCAAGTTAGTTCCTCCACAATAATTAAGGGAACTATAGGATATGTTCCTCCTGAGTATGGAGCAAGTGGTCTAGTATCATCACAAGGAGATATATACAGCTATGGGATTCTTTTATTAGAAATGCTCACTGGAAAGAGACCAACAGATGAAATGTTTTGCAAGAATCTAAACCTACACAAATTCTGTAATATGAACATTCCTGAAAGAATTCTTGAAATAGTGGACCACCGTTTGCTTATGCCATATGTTGAAGATCAGACAGGGATTGTGGAAAACAAGATTAAGAAGTGTTTGGTGATGTTTGCTAGCATTGGAGTTGGATGTTCAGAAGAGTTTTCTGCTCATAGAATACCGATGAAAGATGTTGTACTTAAGTTGAATGAAATCAAATCAAAACTTCCATTCTAG 1254 0.3812 MDLSYNNLYGEVPIGGVFSNVTAISLTGNKNLCGGIPQLQLSPCFRVPSKKYKRSPKKKLILISVIGGVLICSVAFIILHFLTRKPERLPSSLSLKNRLFRVTYRELHEATNGFSSSNLIGSGSFSSIYKGSLVNFERPIVVKVLNLHIHGATKCFMAECKALGKMKHRNLVKIVTCCSSVDYNGKDFKAIVFEYMPNGSLEKMLHDNDGSGNHNLNLTQRVDIALDVARALDYLHNDTEQVVVHCDIKPSNVLLDDDFVAHLGDFGLARLIHGGIGHSTNDQVSSSTIIKGTIGYVPPEYGASGLVSSQGDIYSYGILLLEMLTGKRPTDEMFCKNLNLHKFCNMNIPERILEIVDHRLLMPYVEDQTGIVENKIKKCLVMFASIGVGCSEEFSAHRIPMKDVVLKLNEIKSKLPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10647g00001 417 FunFam LRR receptor-like serine/threonine-protein kinase EFR 86 195 - -
Trme10647g00001 417 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Trme10647g00001 417 Pfam Protein kinase domain 116 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10647g00001 417 Gene3D Phosphorylase Kinase; domain 1 80 195 - -
Trme10647g00001 417 Gene3D Ribonuclease Inhibitor 1 52 IPR032675 -
Trme10647g00001 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Trme10647g00001 417 ProSiteProfiles Protein kinase domain profile. 114 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10647g00001 417 SMART serkin_6 114 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme10647g00001 417 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 196 416 - -
Trme10647g00001 417 Gene3D Transferase(Phosphotransferase) domain 1 196 415 - -
Trme10647g00001 417 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 413 - -
Trme10647g00001 417 SUPERFAMILY Protein kinase-like (PK-like) 90 408 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10647g00001 Trme-Chr10647 207 1627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10647g00001 1 415 Receptor kinase-like Gene Family AT3G47570 44.289 1.23e-114 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme10647g00001 Pkinase 4.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10647g00001 - - mtr:25482466 607.06