Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme106440g00001 ATGGAAGGTGTGGTAATTAGTGAGAAGGGATTGTTGGAATGTGGAAGAAAGTGCACTCCATCACCTTTCTTGTTGAAGACATACATGTTGGTGGAGGATCCGGCTACCGATGATGTGATATCGTGGAACGAAGAAGGAACGGCGTTCGTGGTGTGGCAACCGGCGGAGTTTGCTCGTGATCTCCTTCCAACACTCTTCAAGCATAGCAATTTCTCTAGCTTTGTACGCCAGCTCAATACCTATGTACGTATATTTTACATGTATTGA 267 0.4532 MEGVVISEKGLLECGRKCTPSPFLLKTYMLVEDPATDDVISWNEEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYVRIFYMY 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme106440g00001 88 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme106440g00001 88 PRINTS Heat shock factor (HSF) domain signature 23 46 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme106440g00001 88 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme106440g00001 88 Pfam HSF-type DNA-binding 23 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme106440g00001 88 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 81 IPR027725 -
Trme106440g00001 88 FunFam Heat stress transcription factor B-4 15 85 - -
Trme106440g00001 88 SUPERFAMILY "Winged helix" DNA-binding domain 20 82 IPR036390 -
Trme106440g00001 88 Gene3D - 15 84 IPR036388 -
Trme106440g00001 88 SMART hsfneu3 19 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme106440g00001 Trme-Chr106440 108 374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme106440g00001 20 81 HSF AT2G41690 85.484 2.06e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme106440g00001 HSF_DNA-bind 6.4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme106440g00001 K09419 - gmx:100786140 155.606