Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme106244g00001 ATGAGTTCCTATTCCATTGAGAAACAAAACCATGTTGGGGAAACTCAAACCCCACAAATAGAAGACAATGATACACTTTCTGCCATGGTACTAGGTGCCAATTTGGTTTTTCCTGCTGTTCTTAATGCTGCAATTGAACTCAACTTGTTTGAGATCATTGCTAAAGAAAKTTCACTAGATAATGGTGGATTCTTATCARCTTTTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGACTTACCAAATAGGCTCGACCGTATGTTGCGCTTGCTTGCTAGCTACTCTCTTCTATCTGTTTCCACTCGGACCAATGATGATGGTAGCATCGTAAGAGTTTATGCGATCACCCCGTTGGGGTTGTG 365 0.4055 MSSYSIEKQNHVGETQTPQIEDNDTLSAMVLGANLVFPAVLNAAIELNLFEIIAKEXSLDNGGFLSXFEIASKLPTQHSDLPNRLDRMLRLLASYSLLSVSTRTNDDGSIVRVYAITPLGL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme106244g00001 121 PANTHER O-METHYLTRANSFERASE 28 119 IPR016461 GO:0008168
Trme106244g00001 121 FunFam Caffeic acid 3-O-methyltransferase 5 121 - -
Trme106244g00001 121 Pfam Dimerisation domain 40 93 IPR012967 GO:0046983
Trme106244g00001 121 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 121 IPR016461 GO:0008168
Trme106244g00001 121 Gene3D - 4 121 IPR036388 -
Trme106244g00001 121 SUPERFAMILY "Winged helix" DNA-binding domain 24 120 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme106244g00001 Trme-Chr106244 16 468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme106244g00001 13 119 Monolignol Biosynthesis Gene Families AT5G54160 45.455 1.01e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme106244g00001 - - gmx:100798295 155.221