Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme106149g00001 CTTGGACAAGGAGCATACGGAACGGTGTACAAAGGTAAACTATCTGGCGACATATATGTCGCAGTCAAGCTTCTCAAAACATCCACAGGAAATGGACCTGAGTTCATCAATGAAGTAGGAACAATGAGTCAAATTCACCACGTCAATGTTGTTCACTTAGTAGGCTTTTGTGCCGATGGACACACACGAGCTCTGGTTTACGAGTATTTACCAAATGGTTCGTTGCAGAAATTCATTTCCACAACGGATTTYAAAAACCATTTTTTGAGTTGGGAGAAGTTACAAGAAATTGCGCTTGGRATAGCSAAAGGKATTGAGTATCTTCACCAAGGATGTGACCAAAGGATACTTCACTTCGATATAAAACCGCACAATATCTTACTTGACAATAACTTCACTCCCAAGATATCTGATTTTGGTCTAGCTAAACTTTGTTCTAAAGATCAGAGTGCGGTTTCCATGACTGCGGCTAGGGGGACTATTGGTTATATAGCACCGGAAGTCTTTTCTAGAAACTTTGGTAATGTGTCGTATAAGTCTGATGTGTATAGTTTTGGAATGTTGTTGCTTGAGATGGTTGGGGGAAGGCAAAATGCTGATGTTGTCGAAAAGAGAAGTGGTTTAGGGTATTTTCCGGAATGGATTTATAATTTGATAGAACAAGGGGAT 669 0.3991 LGQGAYGTVYKGKLSGDIYVAVKLLKTSTGNGPEFINEVGTMSQIHHVNVVHLVGFCADGHTRALVYEYLPNGSLQKFISTTDFKNHFLSWEKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDNNFTPKISDFGLAKLCSKDQSAVSMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNADVVEKRSGLGYFPEWIYNLIEQGD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme106149g00001 223 Pfam Protein kinase domain 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme106149g00001 223 PIRSF ILK 1 205 - -
Trme106149g00001 223 Gene3D Transferase(Phosphotransferase) domain 1 74 223 - -
Trme106149g00001 223 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 221 IPR045874 GO:0004672
Trme106149g00001 223 ProSiteProfiles Protein kinase domain profile. 1 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme106149g00001 223 Gene3D Phosphorylase Kinase; domain 1 1 73 - -
Trme106149g00001 223 FunFam Os07g0541700 protein 70 160 - -
Trme106149g00001 223 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Trme106149g00001 223 ProSitePatterns Protein kinases ATP-binding region signature. 1 23 IPR017441 GO:0005524
Trme106149g00001 223 SMART serkin_6 1 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme106149g00001 223 SUPERFAMILY Protein kinase-like (PK-like) 1 217 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme106149g00001 Trme-Chr106149 2 670 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme106149g00001 1 222 Receptor kinase-like Gene Family AT1G66910 56.250 3.62e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trme106149g00001 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme106149g00001 - - jre:109022329 375.17