Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10613g00001 ATGGATGTGGTGGTTGCACTTGGAACTAATNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTAGAACACTGACTTCAGCCACATTTCAAGGACAAGATTTCTTTGAGACAAGTTCCATGCTGATATCATTTATTCTATTAAGGAGATATTTGGAGATTATGGCTAAAGGGAAAACTAGTTTTGGTTTAATGGAGAAGTCTTGGTCTCCAGATGAAAAAATAGAYTCGAATGGGATCGATGATCTTAAGAAACCTTTGTTACAAACTCAAGAAGCTAATGTTACACCTGACCACACATGTGCTATCTGCCTTGAAGACTATTGCGTCAGAAAGAAGCTCAGGATTCTGCCCTGTTGTCACCAGTTTCATGCTGCCTGTGTGGAGAACCTTTTGCCCAGTTTGCAAGCGTGA 411 0.3723 MDVVVALGTNXXXXXXXXXXXRTLTSATFQGQDFFETSSMLISFILLRRYLEIMAKGKTSFGLMEKSWSPDEKIDSNGIDDLKKPLLQTQEANVTPDHTCAICLEDYCVRKKLRILPCCHQFHAACVENLLPSLQA 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10613g00001 136 SUPERFAMILY RING/U-box 89 131 - -
Trme10613g00001 136 Pfam RING-like zinc finger 100 127 IPR001841 -
Trme10613g00001 136 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 62 - -
Trme10613g00001 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10613g00001 Trme-Chr10613 475 1470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10613g00001 1 74 Primary Pumps ATPases AT1G63440 52.000 2.69e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10613g00001 K17686 - tpra:123918652 144.436