Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10605g00001 ATGACGCTTCATTTGCAACTGGAAGAGTTACTTACTTTGAATTCAGTGCATCTTTCAGATCAAGTTTTTGAGGATGATATGGAGAAAAGAAACTTGATTCTTAAGCTTATTTCATTGAAAGAGGAAGAGGAATATTCGAGTAATGAAGAGCCAACTGGAGACATGAATATATCAAAACACAGGATGGAGGCGCATATATTTCACAGGCAGGTTAAGGAGAAGCTGTACTCGTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCACGTGTTTGGTAAAGATGGGCAAGGTGTATTACATTTAGTTGCTGCTCTTGGTTATGATTGGGCCATAGCACCAATTGTAACTTCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGTACGGCTCTACACTGGGCTGCATCCTGTGGCAGGGAGCGAACGGTTGCTCTCCTTGTCTCCATGGGTGCCGCTGCTGGAGCATTGACTGACCCATGTACAGCATTCCCTTCAGGAAGAACACCTGCAGATATTGCTTCTAGCTATGGCCACAAAGGAATTTCGGGTTTTCTTGCTGAGTCATTATTAACTAGCCACCTTGAATCACTCACCGTGGATGATGTGAATAAAGATGGTGCAAAAGAAACTTTGGGAATGAAAGCAGTACAGACGATTTCAGAACGAATTGCAACACCTGTGTTKAGTGGGGATATACCAGATGCTATCTGCCTTAAGGATTCTCTCGATGCTGTCCGGAATGCTACACAAGCTGCTGATAGAATACATCAAGTATATAGAATGCAATCATTTCAAAGAAAGCAGTTAGCTCAGTATGAAGGCGATGATGAGTTTGGATTGTCAGATCAGCAAGCTCTTTCGGTTCTTGCCTCTAAGGCATGCAAATCTGGTCATGGGGATGGTTCAGTCAATGCTGCTGCAATACAAATACAGAAAAAGTTCCGTGGCTGGACAAAGAGAAAAGAATTCCTGTTCATTCGTCAAAGAGTTGTTAAAATTCAG 1011 0.4243 MTLHLQLEELLTLNSVHLSDQVFEDDMEKRNLILKLISLKEEEEYSSNEEPTGDMNISKHRMEAHIFHRQVKEKLYSWLLHKVTETGKGPHVFGKDGQGVLHLVAALGYDWAIAPIVTSGVNINFRDVNGCTALHWAASCGRERTVALLVSMGAAAGALTDPCTAFPSGRTPADIASSYGHKGISGFLAESLLTSHLESLTVDDVNKDGAKETLGMKAVQTISERIATPVXSGDIPDAICLKDSLDAVRNATQAADRIHQVYRMQSFQRKQLAQYEGDDEFGLSDQQALSVLASKACKSGHGDGSVNAAAIQIQKKFRGWTKRKEFLFIRQRVVKIQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10605g00001 337 SUPERFAMILY Ankyrin repeat 84 190 IPR036770 -
Trme10605g00001 337 Gene3D - 60 200 IPR036770 -
Trme10605g00001 337 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 337 - -
Trme10605g00001 337 ProSiteProfiles Ankyrin repeat region circular profile. 129 154 - -
Trme10605g00001 337 Pfam Ankyrin repeats (3 copies) 101 190 IPR002110 GO:0005515
Trme10605g00001 337 ProSiteProfiles IQ motif profile. 307 335 IPR000048 GO:0005515
Trme10605g00001 337 ProSiteProfiles Ankyrin repeat profile. 129 161 IPR002110 GO:0005515
Trme10605g00001 337 SMART ANK_2a 129 158 IPR002110 GO:0005515
Trme10605g00001 337 SMART ANK_2a 168 197 IPR002110 GO:0005515
Trme10605g00001 337 Gene3D - 305 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10605g00001 Trme-Chr10605 90 1562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10605g00001 2 337 CAMTA Transcription Factor Family AT5G09410 55.652 1.65e-125 379