Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1059g00001 ATACCAGATTGCTTGACTTATGTGTCAGCATTCTTATTCTGCCACATCTTTGCATTTGTACTTTCATGGAGACTTGCATTGGCAGCAATACCACTCTCTGTCATGTTCATTGTCCCGGCACTTGTATTCGGGAAGATGATGTTGGATGTCACAATGAAAATGATAGAATCTTATGGTGTCGCTGGTGGGATTGCAGAGCAAGCAATATCTTCAATAAGAACTGTTTTCTCTTATGTTGGGGAGAATCAAACACTAAAAAGATTTAGCACTGCACTTCAAAAAACTATGGAGCTTGGAATAAAGCAAGGATTTGCAAAGGGGTTGATGTTAGGAAGTATGGGAGTTATTTATGTAAGTTGGGGTTTTCAAGCTTGGGTTGGAACGTTTTTGATATCTGAAAAAGGAGAGAAAGGTGGCCATGTATTTGTAGCTGGCTTCAACATCCTAATGGGAGGACTGAGCATTTTAAGTGCACTTCCAAATTTAACTGCCATCATGGAGGCCTCCTCTGCGGTCACTCGTATTTTTGAAATGATTGATAGGGTGTCAACTATAGATTCTGAAGAGAAGAAAGGAAAGGCTTTATCACATGTGAGAGGAGAAATTGAATTTAAAGACATATACTTCTGTTATCCATCTAGGCCAGATTCACCAGTTTTGCAGGAATTCAATCTCACTATTCGAGCAGGCAAGAGGATAGGTCTTGTTGGGGGAAGTGGTTCAGGAAAATCAACTATAATTGCACTGCTTGAAAGGTTTTATGATCCTGTTGAAGGAGAAATATTATTGGATGGTCACAAGATTAATAAACTTCAATTGAAATGGTTGAGATCTAACCTTGGCCTAGTGAATCAAGAGCCTGTTCTTTTTGCCACATCCATAAAAGAGAATATATTATTTGGAAAAGAAGGTGCTTCAATGGAAAGTGTGATCAGTGCAGCTAAAGCATCAAATGCACATGATTTCATTGTCAAGTTACCAGATGGTTATGAAACTCAAGTTGGACAGTTTGGATTTCAATTGTCTGGTGGACAGAAGCAGCGAATCGCCATAGCTAGAGCTTTACTAAGGGATCCAAAGGTTCTCCTTCTTGATGAAGCAACAAGTGCACTGGATGCTCAATCCGAAAGAGTGGTACAAGAAGCGATCGATCAAGCTTCAAAAGGAAGAACAACAATCATCATTGCTCATCGCCTTTCTACAATAAGAACGGCTGACACTATTGCTGTGCTTCAAGCAGGGAGAGTGATTGAATCAGGTACTCATAATGAGCTCATGGAAATAAACGGCGGACAAGGTGGAGAGTACGCTCGTATGGTCGAGTTGCAACAAGTAACAACTCAAAATGATGAATCCAAACATTCCAATCTTCAAACAGAAGGAAAGAGATCTCATAGGATGAATAGGAGCGTTCCACAAAGTCCAGGAGTAAGTTTCAAATCAAGCACACCAGGCACTCCAATGTTGTATCCCTTCAGCCAGGGATTTTCCATCGGTACGCCTTACTCATATTCCATCCAATATGACAATGATGATGATGATAGTTTTGAAGATAATTTAAAAAGACCACACCATCCAGCTCCTTCACAGTGGCGCTTGCTGAAAATGAATGCGCCTGAGTGGGTAAGAGGAGTGTTAGGAATATTGGGAGCAATAGGCTCAGGAGCAGTACAACCAGTAAATGCATACTGTGTTGGATTACTCATATCAATTTATTTTGAACCTGATACCTCTAAGATGAAGTCTAAAGCTAGAGTCTTGGCCCTCGTTTTCTTAGGAATTGGTGTTTTTAACTTCTTCACTAGTATTCTCCAACACTACAATTTTGCTGTCATGGGAGAAAGGTTAACGAAAAGAATACGAGAGAAAATACTCGAAAAATTGATGAGTTTTGAGATAGGATGGTTTGATCATGAAGACAACACAAGTGCAGCCATTTGTGCGAGATTAGCCTCCGAAGCAAACTTGGTTCGTTCCCTTGTCGGGGACAGGATGTCTCTTCTGGCTCAAGCGATTTTTGGATCTGTCTTTGCCTACACTGCAGGACTTGTTCTCTCATGGAGGCTTTCTATTGTGATGATTGCAGTACAGCCATTAGTCATTGGAAGCTTTTATGCAAGAAGTGTTTTGATGAAGACTATGGCGGAAAAAACTCGTAAAGCACAAAGGGAAGGAAGCCAACTTGCAAGTGAAGCTGTTATAAACCATAGAACCATAACCGCATTTAGTTCGCAGAAAAGAATGTTGGCACTCTTCAAATCTACAATGACAGGACCTAAACAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCACAATTTTTCAACACTGGATCAACTGCATTAGCATACTGGTATGGTGGGAAGCTCCTGATACAAGGACTCATAGAACCGACGGAACTCTTTCAAGCATTTTTAATATTACTCTTCACTGCATACATCATTTCAGAAGCTGGAAGCATGACTTCTGATATATCTAAAGGAAGCAATGCAGTTGGATCAGTTTTCGCTATCCTAGACAGGAAAAGTGAGATTGATCCTGAAACCTTGTGGGGATCAGATAAAAAAA 2584 0.4048 IPDCLTYVSAFLFCHIFAFVLSWRLALAAIPLSVMFIVPALVFGKMMLDVTMKMIESYGVAGGIAEQAISSIRTVFSYVGENQTLKRFSTALQKTMELGIKQGFAKGLMLGSMGVIYVSWGFQAWVGTFLISEKGEKGGHVFVAGFNILMGGLSILSALPNLTAIMEASSAVTRIFEMIDRVSTIDSEEKKGKALSHVRGEIEFKDIYFCYPSRPDSPVLQEFNLTIRAGKRIGLVGGSGSGKSTIIALLERFYDPVEGEILLDGHKINKLQLKWLRSNLGLVNQEPVLFATSIKENILFGKEGASMESVISAAKASNAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQEAIDQASKGRTTIIIAHRLSTIRTADTIAVLQAGRVIESGTHNELMEINGGQGGEYARMVELQQVTTQNDESKHSNLQTEGKRSHRMNRSVPQSPGVSFKSSTPGTPMLYPFSQGFSIGTPYSYSIQYDNDDDDSFEDNLKRPHHPAPSQWRLLKMNAPEWVRGVLGILGAIGSGAVQPVNAYCVGLLISIYFEPDTSKMKSKARVLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMSFEIGWFDHEDNTSAAICARLASEANLVRSLVGDRMSLLAQAIFGSVFAYTAGLVLSWRLSIVMIAVQPLVIGSFYARSVLMKTMAEKTRKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMTGPKQESIRQSWISGFGLFSSQFFNTGSTALAYWYGGKLLIQGLIEPTELFQAFLILLFTAYIISEAGSMTSDISKGSNAVGSVFAILDRKSEIDPETLWGSDKK 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1059g00001 861 Pfam ABC transporter 220 369 IPR003439 GO:0005524
Trme1059g00001 861 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 167 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme1059g00001 861 MobiDBLite consensus disorder prediction 446 483 - -
Trme1059g00001 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 443 IPR027417 -
Trme1059g00001 861 FunFam Putative ABC transporter B family member 8 509 855 - -
Trme1059g00001 861 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 545 832 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme1059g00001 861 PANTHER ABC TRANSPORTER B FAMILY 2 602 IPR039421 -
Trme1059g00001 861 SUPERFAMILY ABC transporter transmembrane region 2 180 IPR036640 GO:0005524|GO:0016020
Trme1059g00001 861 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 202 438 IPR003439 GO:0005524
Trme1059g00001 861 FunFam ABC transporter B family member 19 192 444 - -
Trme1059g00001 861 CDD ABC_6TM_Pgp_ABCB1_D2_like 534 850 - -
Trme1059g00001 861 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 175 - -
Trme1059g00001 861 Gene3D - 200 456 IPR027417 -
Trme1059g00001 861 ProSitePatterns ABC transporters family signature. 341 355 IPR017871 GO:0005524|GO:0016887
Trme1059g00001 861 SMART AAA_5 229 415 IPR003593 GO:0016887
Trme1059g00001 861 MobiDBLite consensus disorder prediction 468 483 - -
Trme1059g00001 861 SUPERFAMILY ABC transporter transmembrane region 531 851 IPR036640 GO:0005524|GO:0016020
Trme1059g00001 861 Pfam ABC transporter transmembrane region 546 817 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme1059g00001 861 Pfam ABC transporter transmembrane region 5 152 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trme1059g00001 861 CDD ABC_MTABC3_MDL1_MDL2 202 443 - -
Trme1059g00001 861 Gene3D ABC transporter type 1, transmembrane domain 5 841 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1059g00001 Trme-Chr1059 108 3409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1059g00001 5 853 Calmodulin-binding Proteins AT2G36910 40.000 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1059g00001 K05658 - gmx:100788127 1483