Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105956g00001 ATGTTATACATTGAGAATTATGTTTTTCCCCTCATTAAAAAAGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATCGCTCTTACTACCGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTCGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAG 180 0.3833 MLYIENYVFPLIKKANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALRE 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105956g00001 60 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 9 60 IPR022879 -
Trme105956g00001 60 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 60 IPR027417 -
Trme105956g00001 60 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 11 60 IPR000194 GO:0005524
Trme105956g00001 60 Gene3D - 4 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105956g00001 Trme-Chr105956 261 532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105956g00001 15 60 Primary Pumps ATPases(2) AT1G20260 100.000 2.56e-26 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105956g00001 K02147 - egr:104453437 94.3597