Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105941g00001 ATGGGACCTGGAAATATGTCTAGCATGCACCAGCCATTGCAGGGTGGGAACATGGTTCAACCTCTGATTCCTAGTCACTCTGATATTGCAAAGGTTGTCCAGAAATTGTTACTGCCGAAGGTTCCTGACCATCCCACATGGACTCCTCCTTCAAGGGATTATATGAGTAAGACTTTCACATGTCAGACTTGTGAGCTCACTGTCAGTGAGGTTGATTCTGTTCTTATGTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTCCAGCCAGCAGTCATTAGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGCCGTGTGATGAGATCCTCGATTACGTCACCAAGTTTTCCCTCTAGTACAGCTGCTATTCAACCGTCTTCAGAGAAGAAAGCAGAGAACTTAGATTTAAAGGTCAGCCCACAGATGTTTACAATAAATGGAAACTCTGTTCCAACTGTTTCCAATGCCAATCACAATACTGAGCCGTCATTTGACTCAAATACCCCAGATACGAGAGATATACAAGG 581 0.4389 MGPGNMSSMHQPLQGGNMVQPLIPSHSDIAKVVQKLLLPKVPDHPTWTPPSRDYMSKTFTCQTCELTVSEVDSVLMCDACEKGFHLKCLQPAVIRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSITSPSFPSSTAAIQPSSEKKAENLDLKVSPQMFTINGNSVPTVSNANHNTEPSFDSNTPDTRDIQG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105941g00001 194 Pfam PHD-finger 61 109 IPR019787 -
Trme105941g00001 194 MobiDBLite consensus disorder prediction 165 194 - -
Trme105941g00001 194 ProSiteProfiles Zinc finger PHD-type profile. 58 111 IPR019787 -
Trme105941g00001 194 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 193 - -
Trme105941g00001 194 SMART PHD_3 60 109 IPR001965 -
Trme105941g00001 194 SUPERFAMILY FYVE/PHD zinc finger 51 117 IPR011011 -
Trme105941g00001 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 124 IPR013083 -
Trme105941g00001 194 CDD PHD_SF 60 108 - -
Trme105941g00001 194 ProSitePatterns Zinc finger PHD-type signature. 61 108 IPR019786 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme105941g00001 PHD 1.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105941g00001 - - tpra:123888308 374.4