Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105930g00001 ATGCSGCGTGCTCTTCCCCGAAATGCAAAAATCAATAATGGTGCTAAGGAGTCAATTCAATGGYGCRTGTCCGAATTTATGGGCATTATCACAACTGAGGCTAACGAGCGATGCAAGGCAGAGCATCGAAAGATCATTACAGCAGATGATTTAATATGGGCCATGGAAAAGTTCGGCTTTGATGACTATGTTGGACCTCTCAAGCTTTACCTCAAAAACTATCGCGACCATAAAGATCAGACCCAGTGA 249 0.4337 MXRALPRNAKINNGAKESIQWXXSEFMGIITTEANERCKAEHRKIITADDLIWAMEKFGFDDYVGPLKLYLKNYRDHKDQTQ 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105930g00001 82 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Trme105930g00001 82 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Trme105930g00001 82 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Trme105930g00001 82 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 3 55 IPR003958 -
Trme105930g00001 82 SUPERFAMILY Histone-fold 1 80 IPR009072 GO:0046982
Trme105930g00001 82 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 78 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trme105930g00001 82 Gene3D Histone, subunit A 1 82 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105930g00001 Trme-Chr105930 146 394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105930g00001 1 76 CCAAT-HAP3 Transcription Factor Family AT5G47670 57.895 1.22e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trme105930g00001 CBFD_NFYB_HMF 7.4e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105930g00001 K08065 - oeu:111407182 101.293