Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105856g00001 ATGGGTACCAATATGTATCCTTCATCTGCTTTACTTGGGCAGCACAAGGATGAATCGATTGCCGCCTTACCCGTTGATGATCTAATAGAAAAAGCTGATGGTTTCGCTGGTGTATTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCCAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAACGATGCACCTGCTCTCAAGAAGGCAGATATTGGTATAGCTGTTGCAGATGCTACTGATGCAGCTCGTAGTGCATCCGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATAAGTGCTGTT 318 0.434 MGTNMYPSSALLGQHKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAV 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105856g00001 106 Gene3D - 1 97 IPR023214 -
Trme105856g00001 106 PRINTS P-type cation-transporting ATPase superfamily signature 83 95 - -
Trme105856g00001 106 PRINTS P-type cation-transporting ATPase superfamily signature 60 79 - -
Trme105856g00001 106 PRINTS H+-transporting ATPase (proton pump) signature 32 48 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme105856g00001 106 PRINTS H+-transporting ATPase (proton pump) signature 60 76 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme105856g00001 106 PRINTS H+-transporting ATPase (proton pump) signature 91 106 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme105856g00001 106 FunFam Plasma membrane ATPase 1 106 - -
Trme105856g00001 106 PANTHER CALCIUM-TRANSPORTING ATPASE 1 106 - -
Trme105856g00001 106 Pfam haloacid dehalogenase-like hydrolase 28 74 - -
Trme105856g00001 106 NCBIfam HAD-IC family P-type ATPase 35 106 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme105856g00001 106 SUPERFAMILY HAD-like 19 106 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105856g00001 Trme-Chr105856 1 457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105856g00001 1 106 Primary Pumps ATPases AT5G62670 98.113 5.69e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105856g00001 K01535 - csav:115709839 189.504