Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105762g00001 GCTGAGACTGGGAAACCGCAAGGAGTGGCAGTTCGAAACTCCGGCGATGATGAACCTGGTGGAAAATTTGCTTCTAAAAGAAACTCCGGTAGAGCTTCCGGTGACTCTTCCGACGGAGGTGATGCACGTGGGGGGATACCGAGAGTTTCGGAGGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACTTCAAAAGAAGTCATAGGAAGAAACTGCCCTCTCCCGATCGCACTTGCGGGGGATCGAACCGTGATCCTCCCTACCAAGTTCAGCGGCAATCACCACTAA 369 0.4932 AETGKPQGVAVRNSGDDEPGGKFASKRNSGRASGDSSDGGDARGGIPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCPLPIALAGDRTVILPTKFSGNHH 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105762g00001 122 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 100 IPR035965 -
Trme105762g00001 122 Gene3D PAS domain 45 112 - -
Trme105762g00001 122 MobiDBLite consensus disorder prediction 1 50 - -
Trme105762g00001 122 PANTHER PROTEIN TWIN LOV 1 42 99 - -
Trme105762g00001 122 ProSiteProfiles PAS repeat profile. 49 98 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105762g00001 Trme-Chr105762 143 671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105762g00001 1 99 AGC Kinase Gene Family AT3G45780 72.897 3.44e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105762g00001 K20715 - gmx:100804524 145.976