Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105749g00001 TTCACCAACTTCCCTGAGGAGGCTTCGTCGGAAGAGCTGTGGGTGGTGTTTCGGAAGTATGGCAGAGTGGCTGAAGTGTACATCCCAAAGAAGCTTGATAAATGGGGTCGTCGTTTTGGCTTTGTCAAGTTCAAGGAGGTCAATGAGGTGGAAGTTTTAGGTGAAAGATTGAAAGACGTCTGGCTCGGAACGTTCAAGCTTCGAGTAAATCGAGCTCGTTTTGGCCGATCAGAGGTTAAAGACGAGATCCCACGGAAATCTGAAAAGAAGAGGCAAGCTATTAATGTAGAGGTCACTACTCCTGGAAAATCTTTCAGAACAGCTTTGCTGGGAATTCGAGAAGAAGGCTCTTCTTCAAGGGAGACGTTGTGTATTAAGGCTTCGGTCAATGAAGCTTTTTTGAAGGAATTGAAGGGTAGTATGGTGGTAACTCTAGCTAGGGAAAGAGATGTTAGAAGAATCCGCACTACTTTGTTTATGGAGGGGTTTCAATCTATCAGAGTTACTCATATGGGGGGAAATATGGCCCTGCTTTGTAGCTCGGTAGAAGGAGATATTGCAAAGCTGGTTAGGAGCAAAAATGAGTGTTTGGATTATTATTTTTCTGAGATGAAACCTTGGGAACCTGGGCTGTTTGCGAAGCACAGAGAGCTTTGGGTCCAAGTCTATGG 671 0.4486 FTNFPEEASSEELWVVFRKYGRVAEVYIPKKLDKWGRRFGFVKFKEVNEVEVLGERLKDVWLGTFKLRVNRARFGRSEVKDEIPRKSEKKRQAINVEVTTPGKSFRTALLGIREEGSSSRETLCIKASVNEAFLKELKGSMVVTLARERDVRRIRTTLFMEGFQSIRVTHMGGNMALLCSSVEGDIAKLVRSKNECLDYYFSEMKPWEPGLFAKHRELWVQVYG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105749g00001 224 Gene3D - 1 100 IPR012677 -
Trme105749g00001 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 50 IPR000504 GO:0003723
Trme105749g00001 224 CDD RRM_SF 2 70 - -
Trme105749g00001 224 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 133 - -
Trme105749g00001 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 74 IPR000504 GO:0003723
Trme105749g00001 224 SUPERFAMILY RNA-binding domain, RBD 2 76 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105749g00001 Trme-Chr105749 1 671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105749g00001 3 91 Eukaryotic Initiation Factors Gene Family AT1G71770 33.708 5.66e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105749g00001 - K22611 pvu:PHAVU_008G195200g 102.834