Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme10572g00001 TCTGACGGTCCTAATTGGAAAGTTCCACTTGGAAGAAGAGATAGTTTAACAGCAAATCAAAGTCTTGCTAATCAAAACCTTCCAGGTCCATCATTCAACCTTACTCAACTAAAATCCGCATTTGCTGCTCAAGGTCTCAACACTACTGATCTAGTTGCACTCTCAGGTGCACATACAATTGGCAGAGGTCAATGCAAATTCTTCGTAGACCGTTTATATAATTTCAGCAATACTGGAAATCCTGATCCAACTCTCAACACAACCTACTTACAAACACTGCAATCAATATGTCCCAATAATGGACCCGGTACCACCCTCACCAATTTGGACCTAACTACTCCTGATACATTTGACTCTGCCTACTACTCCAACCTCAAAATTGGAAAGGGGTTATTTCAGAGTGATCAAGAGTTGTTCTCCACGAGCGGCGCAGACACCATTGCCATTGTCGATAGTTTCAACAACAATCAAACCCTTTTCTTTGAAAACTTTAAGGTTTCAATGGTTAAAATGGGTAATGTTGGAGTGTTAACAGGATCTCAAGGTGAAATTAGAACACAATGTAACTTTGTTAATGGAAATTCTGGTCTTGCAACAAAAGTCACTAGAGATTCTTCAGAAGATGGTGGTGTTAGCTCATACTAA 645 0.3984 SDGPNWKVPLGRRDSLTANQSLANQNLPGPSFNLTQLKSAFAAQGLNTTDLVALSGAHTIGRGQCKFFVDRLYNFSNTGNPDPTLNTTYLQTLQSICPNNGPGTTLTNLDLTTPDTFDSAYYSNLKIGKGLFQSDQELFSTSGADTIAIVDSFNNNQTLFFENFKVSMVKMGNVGVLTGSQGEIRTQCNFVNGNSGLATKVTRDSSEDGGVSSY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme10572g00001 214 PANTHER PEROXIDASE 72-RELATED 2 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 Pfam Peroxidase 2 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 FunFam Peroxidase 28 171 - -
Trme10572g00001 214 Gene3D Peroxidase, domain 2 28 171 - -
Trme10572g00001 214 ProSiteProfiles Plant heme peroxidase family profile. 1 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Haem peroxidase superfamily signature 110 125 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Haem peroxidase superfamily signature 50 65 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Haem peroxidase superfamily signature 2 14 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Plant peroxidase signature 124 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Plant peroxidase signature 166 179 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Plant peroxidase signature 2 17 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Plant peroxidase signature 108 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 PRINTS Plant peroxidase signature 49 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 SUPERFAMILY Heme-dependent peroxidases 2 192 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trme10572g00001 214 Gene3D - 2 192 - -
Trme10572g00001 214 ProSitePatterns Peroxidases proximal heme-ligand signature. 50 60 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme10572g00001 Trme-Chr10572 503 1340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme10572g00001 3 193 Peroxidase AT5G06720 62.304 4.14e-81 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme10572g00001 K00430 - gmx:112997600 337.421