Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105726g00001 ATGACCGATCAAGCTAAGATGAACAAGATACACCAAAATGATGTTGCTGCAACACAAAAATGTCCAAGATGTGAATCAACAAACACAAAGTTTTGCTACTACAACAACTACAATCTTTCACAACCACGCCATTTTTGCAAAACTTGTCGTCGTTATTGGACTAGAGGAGGTGCACTTAGAAATGTTCCTGTTGGAGGTGGTTGTAGAAGGAATAATAAAAGAAGCAAAGGAAATTCAATATCAAAATCAACTTCAAAACCTAATCGTAATGATCATCGCTTGGTGGGTACTGGTGGTGGCGGTGGTGGTTCTAGCTCAGCAAGTGCAAATTCTTCTTCTAATAATGGTTGCACTAATTCTAATGTGAATGTGGGGATCTCTCATTTTCCTAC 392 0.3878 MTDQAKMNKIHQNDVAATQKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKRSKGNSISKSTSKPNRNDHRLVGTGGGGGGSSSASANSSSNNGCTNSNVNVGISHFPT 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105726g00001 131 ProSitePatterns Zinc finger Dof-type signature. 21 57 IPR003851 GO:0003677|GO:0006355
Trme105726g00001 131 ProSiteProfiles Zinc finger Dof-type profile. 19 73 IPR003851 GO:0003677|GO:0006355
Trme105726g00001 131 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 112 IPR045174 GO:0003700|GO:0006355
Trme105726g00001 131 Pfam Dof domain, zinc finger 18 73 IPR003851 GO:0003677|GO:0006355
Trme105726g00001 131 MobiDBLite consensus disorder prediction 63 115 - -
Trme105726g00001 131 MobiDBLite consensus disorder prediction 101 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme105726g00001 Trme-Chr105726 1 392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105726g00001 1 76 C2C2-Dof Transcription Factor Family AT1G07640 71.053 1.44e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trme105726g00001 zf-Dof 3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105726g00001 - - cam:101502096 191.43