Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme105719g00001 ATGCTATGGCAGTATTATCAAAGGTCCGGGGGTTGTAAGTTTGGAAAAGCTTGCAAGTTCAACCACACAAGAGGGTTCACAGCACCAATTTCAGAACTTAACTTTCTCGGCTTACCTATTCGTCTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCAAACTGTAGGTTTAATCATCCCGATCCTACAACTGTGGGAGGAGGTGATCCTCAATCAGGGTTTGGTAATGGAGGGTCCGCTGCACTACGAAGTGTATCACAACAATCTTCTGCCTCATGGTCTTCTTCAAGAAAGTTGAATGAAACACCTTT 332 0.4518 MLWQYYQRSGGCKFGKACKFNHTRGFTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGGDPQSGFGNGGSAALRSVSQQSSASWSSSRKLNETP 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme105719g00001 110 ProSiteProfiles Zinc finger C3H1-type profile. 1 25 IPR000571 GO:0046872
Trme105719g00001 110 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 43 67 IPR000571 GO:0046872
Trme105719g00001 110 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4 22 IPR000571 GO:0046872
Trme105719g00001 110 SUPERFAMILY CCCH zinc finger 41 69 IPR036855 GO:0046872
Trme105719g00001 110 PANTHER PROTEIN PHOSPHATASE RELATED 4 109 - -
Trme105719g00001 110 ProSiteProfiles Zinc finger C3H1-type profile. 41 69 IPR000571 GO:0046872
Trme105719g00001 110 Gene3D - 3 74 - -
Trme105719g00001 110 MobiDBLite consensus disorder prediction 84 110 - -
Trme105719g00001 110 SMART c3hfinal6 41 68 IPR000571 GO:0046872
Trme105719g00001 110 SMART c3hfinal6 2 24 IPR000571 GO:0046872
Trme105719g00001 110 MobiDBLite consensus disorder prediction 67 110 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme105719g00001 5 76 C2H2 Transcription Factor Family AT5G18550 41.892 1.49e-13 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme105719g00001 zf-CCCH 9.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme105719g00001 - - tpra:123882932 207.608